4ZM0A

Antitoxin phd from phage p1 in complex with its operator dna inverted repeat
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
55
structure length
55
Chain Sequence
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
pubmed doi rcsb
molecule tags Transcription
source organism Enterobacteria phage p1
molecule keywords Antitoxin phd
total genus 14
structure length 55
sequence length 55
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 4zm0A00
3G5OA 3K33B 4ZM0A 2A6QA 3D55A 3HS2A 3KH2E 2ODKA 3HRYA 3CTOA 3OEIA 4ZM2A 3OEIE 3K6QA 4ZLXA
chains in the Genus database with same CATH superfamily
4ZM0A 2A6QA 4HLHC 4KZLC 3HS2A 4UI8C 5FPFC 4UI7C 4HKNC 4L0IC 5C5PC 4L0VC 2ZIXB 4L0BC 4L10C 4L33C 5C5RC 4UI3C 5ADQB 4HLGC 4KZUC 4HMHC 3CTOA 3OEIA 4L0TC 4L2KC 4ZLXA 4KZQC 3HJ6A 4L0SC 3G5OA 3K33B 4L09C 4L31C 3D55A 5ADTB 3KH2E 2ODKA 4HKIC 4UI6C 4L32C 4ZM2A 4UI5C 4HL5C 3OEIE 4L2GC 4HLMC 4HKKB 4HLFC 4L2FC 5C5QC 4UVPB 4L34C 3HRYA 4UI4C 5ADSB 4HLKC 3K6QA 5ADRB
chains in the Genus database with same CATH topology
3G5OA 3K33B 4ZM0A 2A6QA 3D55A 3HS2A 3KH2E 2ODKA 3HRYA 3CTOA 3OEIA 4ZM2A 3OEIE 3K6QA 4ZLXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G5O A;  3K33 B;  4ZM0 A;  2A6Q A;  3D55 A;  3HS2 A;  3KH2 E;  2ODK A;  3HRY A;  3CTO A;  3OEI A;  4ZM2 A;  3OEI E;  3K6Q A;  4ZLX A; 
#chains in the Genus database with same CATH topology
 4ZM0 A;  2A6Q A;  4HLH C;  4KZL C;  3HS2 A;  4UI8 C;  5FPF C;  4UI7 C;  4HKN C;  4L0I C;  5C5P C;  4L0V C;  2ZIX B;  4L0B C;  4L10 C;  4L33 C;  5C5R C;  4UI3 C;  5ADQ B;  4HLG C;  4KZU C;  4HMH C;  3CTO A;  3OEI A;  4L0T C;  4L2K C;  4ZLX A;  4KZQ C;  3HJ6 A;  4L0S C;  3G5O A;  3K33 B;  4L09 C;  4L31 C;  3D55 A;  5ADT B;  3KH2 E;  2ODK A;  4HKI C;  4UI6 C;  4L32 C;  4ZM2 A;  4UI5 C;  4HL5 C;  3OEI E;  4L2G C;  4HLM C;  4HKK B;  4HLF C;  4L2F C;  5C5Q C;  4UVP B;  4L34 C;  3HRY A;  4UI4 C;  5ADS B;  4HLK C;  3K6Q A;  5ADR B; 
#chains in the Genus database with same CATH homology
 3G5O A;  3K33 B;  4ZM0 A;  2A6Q A;  3D55 A;  3HS2 A;  3KH2 E;  2ODK A;  3HRY A;  3CTO A;  3OEI A;  4ZM2 A;  3OEI E;  3K6Q A;  4ZLX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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