4ZM0A

Antitoxin phd from phage p1 in complex with its operator dna inverted repeat
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
55
structure length
55
Chain Sequence
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
pubmed doi rcsb
molecule tags Transcription
source organism Enterobacteria phage p1
molecule keywords Antitoxin phd
total genus 14
structure length 55
sequence length 55
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 4zm0A00
3KH2E 4ZM0A 3G5OA 3OEIA 4ZLXA 3HS2A 2A6QA 3K6QA 3HRYA 3CTOA 3OEIE 4ZM2A 3K33B 3D55A 2ODKA
chains in the Genus database with same CATH superfamily
4L34C 4KZQC 4L10C 2ZIXB 5C5RC 5FPFC 3HS2A 3OEIE 4KZLC 3HRYA 5ADTB 5C5PC 5C5QC 4L09C 4L2KC 2A6QA 4L0VC 4L2FC 3KH2E 4UI4C 4UI5C 5ADQB 3G5OA 3CTOA 4L32C 4ZM2A 5ADSB 3K6QA 3D55A 4UI7C 4HLHC 4HLGC 4HMHC 4HLFC 4L0TC 3HJ6A 3OEIA 4HLMC 4HKIC 4L0BC 4L0IC 4L31C 4L0SC 4UI3C 4UI8C 4HLKC 4KZUC 4HKKB 4HKNC 4UI6C 5ADRB 4L2GC 4UVPB 4ZM0A 4ZLXA 4L33C 3K33B 4HL5C 2ODKA
chains in the Genus database with same CATH topology
3KH2E 4ZM0A 3G5OA 3OEIA 4ZLXA 3HS2A 2A6QA 3K6QA 3HRYA 3CTOA 3OEIE 4ZM2A 3K33B 3D55A 2ODKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KH2 E;  4ZM0 A;  3G5O A;  3OEI A;  4ZLX A;  3HS2 A;  2A6Q A;  3K6Q A;  3HRY A;  3CTO A;  3OEI E;  4ZM2 A;  3K33 B;  3D55 A;  2ODK A; 
#chains in the Genus database with same CATH topology
 4L34 C;  4KZQ C;  4L10 C;  2ZIX B;  5C5R C;  5FPF C;  3HS2 A;  3OEI E;  4KZL C;  3HRY A;  5ADT B;  5C5P C;  5C5Q C;  4L09 C;  4L2K C;  2A6Q A;  4L0V C;  4L2F C;  3KH2 E;  4UI4 C;  4UI5 C;  5ADQ B;  3G5O A;  3CTO A;  4L32 C;  4ZM2 A;  5ADS B;  3K6Q A;  3D55 A;  4UI7 C;  4HLH C;  4HLG C;  4HMH C;  4HLF C;  4L0T C;  3HJ6 A;  3OEI A;  4HLM C;  4HKI C;  4L0B C;  4L0I C;  4L31 C;  4L0S C;  4UI3 C;  4UI8 C;  4HLK C;  4KZU C;  4HKK B;  4HKN C;  4UI6 C;  5ADR B;  4L2G C;  4UVP B;  4ZM0 A;  4ZLX A;  4L33 C;  3K33 B;  4HL5 C;  2ODK A; 
#chains in the Genus database with same CATH homology
 3KH2 E;  4ZM0 A;  3G5O A;  3OEI A;  4ZLX A;  3HS2 A;  2A6Q A;  3K6Q A;  3HRY A;  3CTO A;  3OEI E;  4ZM2 A;  3K33 B;  3D55 A;  2ODK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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