4ZM2A

Antitoxin phd from phage p1 in complex with its operator dna inverted repeat in a monoclinic space group
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
52
structure length
52
Chain Sequence
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
pubmed doi rcsb
molecule tags Transcription
source organism Enterobacteria phage p1
molecule keywords Antitoxin phd
total genus 13
structure length 52
sequence length 52
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 4zm2A00
3OEIE 3HRYA 3G5OA 3CTOA 4ZM0A 3D55A 3K6QA 3OEIA 3K33B 3KH2E 4ZM2A 3HS2A 4ZLXA 2ODKA 2A6QA
chains in the Genus database with same CATH superfamily
4KZLC 4HLGC 4HL5C 4L09C 3CTOA 3OEIA 4KZUC 3K33B 4HKKB 4L32C 4ZLXA 4L0SC 4L0BC 4L2GC 5C5PC 4HKIC 4HLFC 4L0IC 4UI6C 3HRYA 4L31C 4UI8C 4ZM0A 4UI4C 4L33C 5ADRB 5ADTB 2A6QA 4L0VC 2ZIXB 4L2KC 5ADQB 4HKNC 3OEIE 4HLHC 4HLMC 4KZQC 4L10C 4L2FC 4ZM2A 4UI5C 3HS2A 4HMHC 3KH2E 2ODKA 4L0TC 4UI3C 5C5QC 5FPFC 4HLKC 5C5RC 5ADSB 3G5OA 3HJ6A 3D55A 3K6QA 4UVPB 4UI7C 4L34C
chains in the Genus database with same CATH topology
3OEIE 3HRYA 3G5OA 3CTOA 4ZM0A 3D55A 3K6QA 3OEIA 3K33B 3KH2E 4ZM2A 3HS2A 4ZLXA 2ODKA 2A6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OEI E;  3HRY A;  3G5O A;  3CTO A;  4ZM0 A;  3D55 A;  3K6Q A;  3OEI A;  3K33 B;  3KH2 E;  4ZM2 A;  3HS2 A;  4ZLX A;  2ODK A;  2A6Q A; 
#chains in the Genus database with same CATH topology
 4KZL C;  4HLG C;  4HL5 C;  4L09 C;  3CTO A;  3OEI A;  4KZU C;  3K33 B;  4HKK B;  4L32 C;  4ZLX A;  4L0S C;  4L0B C;  4L2G C;  5C5P C;  4HKI C;  4HLF C;  4L0I C;  4UI6 C;  3HRY A;  4L31 C;  4UI8 C;  4ZM0 A;  4UI4 C;  4L33 C;  5ADR B;  5ADT B;  2A6Q A;  4L0V C;  2ZIX B;  4L2K C;  5ADQ B;  4HKN C;  3OEI E;  4HLH C;  4HLM C;  4KZQ C;  4L10 C;  4L2F C;  4ZM2 A;  4UI5 C;  3HS2 A;  4HMH C;  3KH2 E;  2ODK A;  4L0T C;  4UI3 C;  5C5Q C;  5FPF C;  4HLK C;  5C5R C;  5ADS B;  3G5O A;  3HJ6 A;  3D55 A;  3K6Q A;  4UVP B;  4UI7 C;  4L34 C; 
#chains in the Genus database with same CATH homology
 3OEI E;  3HRY A;  3G5O A;  3CTO A;  4ZM0 A;  3D55 A;  3K6Q A;  3OEI A;  3K33 B;  3KH2 E;  4ZM2 A;  3HS2 A;  4ZLX A;  2ODK A;  2A6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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