4ZM2A

Antitoxin phd from phage p1 in complex with its operator dna inverted repeat in a monoclinic space group
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
52
structure length
52
Chain Sequence
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
pubmed doi rcsb
molecule tags Transcription
source organism Enterobacteria phage p1
molecule keywords Antitoxin phd
total genus 13
structure length 52
sequence length 52
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 4zm2A00
2A6QA 3D55A 3OEIA 4ZLXA 3CTOA 4ZM2A 3K33B 3HRYA 3HS2A 3K6QA 2ODKA 3G5OA 3KH2E 3OEIE 4ZM0A
chains in the Genus database with same CATH superfamily
2A6QA 5C5PC 3D55A 3OEIA 4HKKB 4L0TC 4L33C 4UI4C 4UI6C 5C5RC 5ADQB 4L0VC 4HLFC 4L2KC 2ODKA 4HL5C 4HLKC 4L10C 4KZLC 4ZLXA 4HLHC 4HLMC 4L2GC 4ZM2A 4UI5C 3K6QA 5ADTB 4KZUC 3KH2E 3OEIE 4ZM0A 4UVPB 4L0IC 3CTOA 4L2FC 4UI8C 3HRYA 3HS2A 4HLGC 2ZIXB 4L0SC 5C5QC 5ADSB 3G5OA 4KZQC 4L34C 4HKIC 5ADRB 3K33B 3HJ6A 4HKNC 4HMHC 4L0BC 4L09C 4L32C 4UI3C 4UI7C 5FPFC 4L31C
chains in the Genus database with same CATH topology
2A6QA 3D55A 3OEIA 4ZLXA 3CTOA 4ZM2A 3K33B 3HRYA 3HS2A 3K6QA 2ODKA 3G5OA 3KH2E 3OEIE 4ZM0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A6Q A;  3D55 A;  3OEI A;  4ZLX A;  3CTO A;  4ZM2 A;  3K33 B;  3HRY A;  3HS2 A;  3K6Q A;  2ODK A;  3G5O A;  3KH2 E;  3OEI E;  4ZM0 A; 
#chains in the Genus database with same CATH topology
 2A6Q A;  5C5P C;  3D55 A;  3OEI A;  4HKK B;  4L0T C;  4L33 C;  4UI4 C;  4UI6 C;  5C5R C;  5ADQ B;  4L0V C;  4HLF C;  4L2K C;  2ODK A;  4HL5 C;  4HLK C;  4L10 C;  4KZL C;  4ZLX A;  4HLH C;  4HLM C;  4L2G C;  4ZM2 A;  4UI5 C;  3K6Q A;  5ADT B;  4KZU C;  3KH2 E;  3OEI E;  4ZM0 A;  4UVP B;  4L0I C;  3CTO A;  4L2F C;  4UI8 C;  3HRY A;  3HS2 A;  4HLG C;  2ZIX B;  4L0S C;  5C5Q C;  5ADS B;  3G5O A;  4KZQ C;  4L34 C;  4HKI C;  5ADR B;  3K33 B;  3HJ6 A;  4HKN C;  4HMH C;  4L0B C;  4L09 C;  4L32 C;  4UI3 C;  4UI7 C;  5FPF C;  4L31 C; 
#chains in the Genus database with same CATH homology
 2A6Q A;  3D55 A;  3OEI A;  4ZLX A;  3CTO A;  4ZM2 A;  3K33 B;  3HRY A;  3HS2 A;  3K6Q A;  2ODK A;  3G5O A;  3KH2 E;  3OEI E;  4ZM0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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