5CZC | Genus

Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	113
sequence length	300
structure length	300
Chain Sequence	GATAMLFPGMGPAAFSDVGRFMVTNRYTRELLAEADDTLGYSLVDRFRQAEGDYSEYAQIAFLVNCVALARWAEQTMDLTPRICAGASFGEKSVAAYSGALTFADAVRMTAGLARCMDEYFRTEHLGVVTHSFVRAPRERLDEILAELDERGEWHEISCHIDHDFFMLTLHERNSVWLEGRLRSVGAMPLYAMRPPMHAAAFGGLRDKAEEEVIAPLTFHDPTLPVVADQDGKVLTTGDEVRTMLLESFVRPLRWPDVISSLQDQGVTRVCVAGPDSLFGRVGTTTRAFEVIAATPRLAL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Streptomyces halstedii
publication title	Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis. pubmed doi rcsb
molecule keywords	Malonyl-CoA-[acyl-carrier-protein] transacylase
total genus	113
structure length	300
sequence length	300
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-07-31

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.366.10	Alpha Beta	3-Layer(aba) Sandwich	Malonyl-Coenzyme A Acyl Carrier Protein; domain 2	Malonyl-Coenzyme A Acyl Carrier Protein, domain 2	5czcA01

2UV8G 2G2YA 5DZ6A 2G2OA 3EZOA 2JFDA 2QJ3A 5DZ7A 3IM8A 2CUYA 2PFFB 2HG4A 3HHDA 5CZCA 2JFKA 2H1YA 3TQEA 3SBMA 3IM9A 2VKZG 3H0PA 2QO3A 3HMJG 3RGIA 3K89A 2G2ZA 2VZ9A 2G1HA 4QBUA 1MLAA 2C2NA 2VZ8A 3PTWA 4RL1A 3R97A 4RR5A 2QC3A 1NM2A 3G87A 3HJVA 3QATA 5CZDA
chains in the Genus database with same CATH superfamily

2UV8G 2G2YA 5DZ6A 2G2OA 3EZOA 2JFDA 2QJ3A 5DZ7A 3TZYA 3IM8A 2CUYA 2PFFB 3TZWA 2HG4A 3TZXA 3HHDA 5CZCA 2JFKA 2H1YA 3TQEA 3SBMA 3IM9A 2VKZG 3H0PA 2QO3A 3HMJG 3RGIA 4AMPA 3K89A 2G2ZA 2VZ9A 2G1HA 4AMNA 4QBUA 1MLAA 2C2NA 2VZ8A 3PTWA 4RL1A 4AMMA 4AMOA 3R97A 4RR5A 2QC3A 1NM2A 3G87A 3TZZA 3HJVA 3QATA 5CZDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2UV8 G;  2G2Y A;  5DZ6 A;  2G2O A;  3EZO A;  2JFD A;  2QJ3 A;  5DZ7 A;  3IM8 A;  2CUY A;  2PFF B;  2HG4 A;  3HHD A;  5CZC A;  2JFK A;  2H1Y A;  3TQE A;  3SBM A;  3IM9 A;  2VKZ G;  3H0P A;  2QO3 A;  3HMJ G;  3RGI A;  3K89 A;  2G2Z A;  2VZ9 A;  2G1H A;  4QBU A;  1MLA A;  2C2N A;  2VZ8 A;  3PTW A;  4RL1 A;  3R97 A;  4RR5 A;  2QC3 A;  1NM2 A;  3G87 A;  3HJV A;  3QAT A;  5CZD A; 
#chains in the Genus database with same CATH topology
 2UV8 G;  2G2Y A;  5DZ6 A;  2G2O A;  3EZO A;  2JFD A;  2QJ3 A;  5DZ7 A;  3TZY A;  3IM8 A;  2CUY A;  2PFF B;  3TZW A;  2HG4 A;  3TZX A;  3HHD A;  5CZC A;  2JFK A;  2H1Y A;  3TQE A;  3SBM A;  3IM9 A;  2VKZ G;  3H0P A;  2QO3 A;  3HMJ G;  3RGI A;  4AMP A;  3K89 A;  2G2Z A;  2VZ9 A;  2G1H A;  4AMN A;  4QBU A;  1MLA A;  2C2N A;  2VZ8 A;  3PTW A;  4RL1 A;  4AMM A;  4AMO A;  3R97 A;  4RR5 A;  2QC3 A;  1NM2 A;  3G87 A;  3TZZ A;  3HJV A;  3QAT A;  5CZD A; 
#chains in the Genus database with same CATH homology
 2UV8 G;  2G2Y A;  5DZ6 A;  2G2O A;  3EZO A;  2JFD A;  2QJ3 A;  5DZ7 A;  3IM8 A;  2CUY A;  2PFF B;  2HG4 A;  3HHD A;  5CZC A;  2JFK A;  2H1Y A;  3TQE A;  3SBM A;  3IM9 A;  2VKZ G;  3H0P A;  2QO3 A;  3HMJ G;  3RGI A;  3K89 A;  2G2Z A;  2VZ9 A;  2G1H A;  4QBU A;  1MLA A;  2C2N A;  2VZ8 A;  3PTW A;  4RL1 A;  3R97 A;  4RR5 A;  2QC3 A;  1NM2 A;  3G87 A;  3HJV A;  3QAT A;  5CZD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5CZCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN