5E1VA

Crystal structure of a monomeric dehydratase domain from a trans at polyketide synthase split module
Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
273
structure length
273
Chain Sequence
VKKITKQLTLSLKNPFIYHHVVYGQNVLPGLAYIDIIYQIFREHGFSCSELQLRNLSIYQPLTAEQDAVIVLNIQCAEKKEGQWQITAKGIEKRDGKEASEEKLYMKADMHADSPAIFEETLDLSQIKASAQNVVQLDDVYEQCRRQELVHSEYMKAKGCIYEEEDGVLLELSLGSEAMLHAEGFMFHPTLIDGSGVGANHLLTSLLKGEQRLYLPLFYESFSASALLQTDCMTRIKRSSVRREKELIYVTLEFFNASGEKVAELKNFTSKLV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII'1 (71-74)S1 (9-16)S5 (68-70)TI1 (17-20)AH4 (143-153)S2 (26-28)AH1 (21-25)3H4 (210-213)TIV2 (27-30)AH5 (182-186)3H1 (36-38)S13 (220-230)AH2 (39-50)S8 (109-117)3H2 (54-56)S4 (58-64)TIV4 (101-104)S7 (89-99)3H3 (159-161)AH3 (130-136)S9 (139-142)S10 (155-157)TIV5 (191-194)TI2 (170-173)S11 (163-170)AH6 (195-209)S12 (173-180)TI3 (187-190)TI4 (188-191)TIV6 (234-237)S14 (237-243)S17 (267-278)TI'2 (213-216)S16 (253-261)TII'2 (250-253)S15 (248-250)3H5 (244-246)TI5 (262-265)TIV1 (7-10)S3 (31-34)S6 (75-86)TVIII2 (84-87)TII1 (86-89)TIV3 (100-103)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Bacillus subtilis (strain 168)
publication title Crystal structure of a monomeric dehydratase domain from a trans AT polyketide synthase split module
rcsb
molecule keywords Polyketide synthase PksL
total genus 78
structure length 273
sequence length 273
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.110 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 5e1vA00
5KKUA 4U3VA 3HRQA 2VZ9A 5BP2A 3EL6A 4OOCA 3KG6A 4KC5A 2VZ8A 5BP3A 3KG9A 3HRRA 5E1VA 4LN9A 3KG7A
chains in the Genus database with same CATH superfamily
4WNBB 3AZ8A 2OKIA 3U0AA 3EXZA 3S6PA 5T02A 3LMBA 4QD9A 5BP2A 5BUXA 4K49A 4KC5A 5HZ4A 2FUJA 2QQPA 2XFLA 2B3MA 5HMCA 3QY3A 3KG7A 4K4CA 4RLJA 5DIOA 3ZH5A 3KV8A 3KW1A 4K4DA 3R35A 5EP5A 2VZ8A 2V1OA 4I82A 1ZHGA 5SZVA 4K02A 2OWNA 3OMLA 4FFUA 1Q6WA 1VH9A 3KVUA 1Q4SA 3S4KA 3E1EA 3ED0A 1Q4UA 3HDUA 4R4UA 5EO2A 4B0CA 5EGKA 4HZNA 4MZQA 4LN9A 1LO8A 1WLVA 2GVHA 4RLWB 4WNBA 5DM5A 5F6RA 4A0ZA 3HRQA 3R3BA 4MTUA 4RV2B 3IR3A 4OOCA 4CL6A 2OAFA 1J1YA 2PRXA 5HMBA 3F1TA 4B0BA 4HZPA 3GEKA 3R36A 1C8UA 4M20A 4K4AA 4ORDA 1Y7UA 1NJKA 2QQ2A 3LW3A 3TEAA 3Q62A 4A12A 3P3FA 3R34A 5BYUA 4KEHA 5HWFA 3CF8A 1PN2A 3ESIA 3BJKA 3AZAA 4ZW0A 3KG9A 1LO7A 3DOZA 5HD6A 4B0JA 4XY5A 1VH5A 3LZ7A 3BNVA 5EGLA 3KG8A 2VZ9A 5SZZA 2BI0A 3D6XA 3F5OA 2OKHA 3KHPA 4GAKA 4RLWA 5T07A 1PSUA 2HLJA 4I45A 4ZV3A 4RV2A 1Z54A 4U3VA 2DSLA 3R3CA 2F3XA 5SZYA 1T82A 3QOOA 3HRRA 3KVIA 5E1VA 2VKZG 3ZH7B 1TBUA 3DKZA 5BUYA 2C2IA 4GAHA 5CPGA 3LWGA 2OIWA 2OV9A 4QFWA 3B7KA 4K4BA 4XY6A 3P2QA 2GLLA 1SC0A 2FS2A 2Q78A 4QD8A 4A0XA 2B6EA 3CJYA 2UV8G 4B8UA 1PN4A 1YLIA 3E8PA 3NWZA 4RLTB 2H4UA 4AE7A 4R9ZA 4AE8A 4RLUB 2GF6A 4OOBA 1S5UA 1MKBA 2QWZA 5EO4A 4ZJBA 3KVZA 4YBVA 2ESSA 2HX5A 1S9CA 2O5UA 3CK1A 4MOBA 4RMMA 3KH8A 2PZHA 3R3DA 3K67A 3WEWA 5BP3A 3HMJG 5SZUA 3ZH7A 3CF9A 4W78B 5T06A 2O6BA 3D6LA 3KG6A 5KL9A 1BVQA 3KX7A 3R32A 3R37A 3B18A 1ZKIA 2EGIA 3HM0A 4FQ9A 1SH8A 2EGRA 3DP3A 2AV9A 3P2SA 1Z6BA 4QDBA 2GLVA 1MKAA 4I83A 4RLTA 2CWZA 4H4GA 3SPSA 2GLMA 4RLUA 2NUJA 4IENA 4QD7A 3P3IA 3R3FA 1VPMA 2EISA 5EGJA 3KV7A 3DP2A 3R3AA 3P2RA 3B7JA 2HBOA 3R87A 1WM6A 4ZRBA 3LBBA 4ZRFA 4I4JA 4W78A 2Q2BA 1U1ZA 3KX8A 2O6UA 2PFCA 4E3EA 4HZOA 2O6TA 2F0XA 3BBJA 3E29A 3FRNA 3KUWA 3LBEA 5KKUA 3RD7A 2CYEA 1OHFA 4RLJB 1IQ6A 2XEMA 3EL6A 4K00A 2W3XA 1WN3A 4A0YA 3D04A 1SBKA 4NCPA 4QDAA 1IXLA 1WLUA 3AZ9A 3KUVA 2F41A 5BUWA 4MOCA 4B0IA 3DOYA 1LO9A 1Q4TA 2EGJA 2GLPA 2PIMA 3DP0A 1YOCA 3AZBA 2CY9A 1VI8A 3ZH6A 3DP1A 3RQBA
chains in the Genus database with same CATH topology
3U0AA 3S6PA 5BP2A 2QQPA 4KC5A 3CJYA 2UV8G 3KG9A 4R9ZA 3KG7A 3ZH5A 3KG8A 2VZ9A 2VZ8A 2PFCA 5BP3A 3BBJA 3HMJG 3FRNA 3ZH7A 5KKUA 3RD7A 4U3VA 1OHFA 3EL6A 3KG6A 3HRRA 3B18A 4R4UA 5E1VA 2VKZG 4LN9A 3ZH7B 3HRQA 4OOCA 4QFWA 3ZH6A 3RQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KKU A;  4U3V A;  3HRQ A;  2VZ9 A;  5BP2 A;  3EL6 A;  4OOC A;  3KG6 A;  4KC5 A;  2VZ8 A;  5BP3 A;  3KG9 A;  3HRR A;  5E1V A;  4LN9 A;  3KG7 A; 
#chains in the Genus database with same CATH topology
 4WNB B;  3AZ8 A;  2OKI A;  3U0A A;  3EXZ A;  3S6P A;  5T02 A;  3LMB A;  4QD9 A;  5BP2 A;  5BUX A;  4K49 A;  4KC5 A;  5HZ4 A;  2FUJ A;  2QQP A;  2XFL A;  2B3M A;  5HMC A;  3QY3 A;  3KG7 A;  4K4C A;  4RLJ A;  5DIO A;  3ZH5 A;  3KV8 A;  3KW1 A;  4K4D A;  3R35 A;  5EP5 A;  2VZ8 A;  2V1O A;  4I82 A;  1ZHG A;  5SZV A;  4K02 A;  2OWN A;  3OML A;  4FFU A;  1Q6W A;  1VH9 A;  3KVU A;  1Q4S A;  3S4K A;  3E1E A;  3ED0 A;  1Q4U A;  3HDU A;  4R4U A;  5EO2 A;  4B0C A;  5EGK A;  4HZN A;  4MZQ A;  4LN9 A;  1LO8 A;  1WLV A;  2GVH A;  4RLW B;  4WNB A;  5DM5 A;  5F6R A;  4A0Z A;  3HRQ A;  3R3B A;  4MTU A;  4RV2 B;  3IR3 A;  4OOC A;  4CL6 A;  2OAF A;  1J1Y A;  2PRX A;  5HMB A;  3F1T A;  4B0B A;  4HZP A;  3GEK A;  3R36 A;  1C8U A;  4M20 A;  4K4A A;  4ORD A;  1Y7U A;  1NJK A;  2QQ2 A;  3LW3 A;  3TEA A;  3Q62 A;  4A12 A;  3P3F A;  3R34 A;  5BYU A;  4KEH A;  5HWF A;  3CF8 A;  1PN2 A;  3ESI A;  3BJK A;  3AZA A;  4ZW0 A;  3KG9 A;  1LO7 A;  3DOZ A;  5HD6 A;  4B0J A;  4XY5 A;  1VH5 A;  3LZ7 A;  3BNV A;  5EGL A;  3KG8 A;  2VZ9 A;  5SZZ A;  2BI0 A;  3D6X A;  3F5O A;  2OKH A;  3KHP A;  4GAK A;  4RLW A;  5T07 A;  1PSU A;  2HLJ A;  4I45 A;  4ZV3 A;  4RV2 A;  1Z54 A;  4U3V A;  2DSL A;  3R3C A;  2F3X A;  5SZY A;  1T82 A;  3QOO A;  3HRR A;  3KVI A;  5E1V A;  2VKZ G;  3ZH7 B;  1TBU A;  3DKZ A;  5BUY A;  2C2I A;  4GAH A;  5CPG A;  3LWG A;  2OIW A;  2OV9 A;  4QFW A;  3B7K A;  4K4B A;  4XY6 A;  3P2Q A;  2GLL A;  1SC0 A;  2FS2 A;  2Q78 A;  4QD8 A;  4A0X A;  2B6E A;  3CJY A;  2UV8 G;  4B8U A;  1PN4 A;  1YLI A;  3E8P A;  3NWZ A;  4RLT B;  2H4U A;  4AE7 A;  4R9Z A;  4AE8 A;  4RLU B;  2GF6 A;  4OOB A;  1S5U A;  1MKB A;  2QWZ A;  5EO4 A;  4ZJB A;  3KVZ A;  4YBV A;  2ESS A;  2HX5 A;  1S9C A;  2O5U A;  3CK1 A;  4MOB A;  4RMM A;  3KH8 A;  2PZH A;  3R3D A;  3K67 A;  3WEW A;  5BP3 A;  3HMJ G;  5SZU A;  3ZH7 A;  3CF9 A;  4W78 B;  5T06 A;  2O6B A;  3D6L A;  3KG6 A;  5KL9 A;  1BVQ A;  3KX7 A;  3R32 A;  3R37 A;  3B18 A;  1ZKI A;  2EGI A;  3HM0 A;  4FQ9 A;  1SH8 A;  2EGR A;  3DP3 A;  2AV9 A;  3P2S A;  1Z6B A;  4QDB A;  2GLV A;  1MKA A;  4I83 A;  4RLT A;  2CWZ A;  4H4G A;  3SPS A;  2GLM A;  4RLU A;  2NUJ A;  4IEN A;  4QD7 A;  3P3I A;  3R3F A;  1VPM A;  2EIS A;  5EGJ A;  3KV7 A;  3DP2 A;  3R3A A;  3P2R A;  3B7J A;  2HBO A;  3R87 A;  1WM6 A;  4ZRB A;  3LBB A;  4ZRF A;  4I4J A;  4W78 A;  2Q2B A;  1U1Z A;  3KX8 A;  2O6U A;  2PFC A;  4E3E A;  4HZO A;  2O6T A;  2F0X A;  3BBJ A;  3E29 A;  3FRN A;  3KUW A;  3LBE A;  5KKU A;  3RD7 A;  2CYE A;  1OHF A;  4RLJ B;  1IQ6 A;  2XEM A;  3EL6 A;  4K00 A;  2W3X A;  1WN3 A;  4A0Y A;  3D04 A;  1SBK A;  4NCP A;  4QDA A;  1IXL A;  1WLU A;  3AZ9 A;  3KUV A;  2F41 A;  5BUW A;  4MOC A;  4B0I A;  3DOY A;  1LO9 A;  1Q4T A;  2EGJ A;  2GLP A;  2PIM A;  3DP0 A;  1YOC A;  3AZB A;  2CY9 A;  1VI8 A;  3ZH6 A;  3DP1 A;  3RQB A; 
#chains in the Genus database with same CATH homology
 3U0A A;  3S6P A;  5BP2 A;  2QQP A;  4KC5 A;  3CJY A;  2UV8 G;  3KG9 A;  4R9Z A;  3KG7 A;  3ZH5 A;  3KG8 A;  2VZ9 A;  2VZ8 A;  2PFC A;  5BP3 A;  3BBJ A;  3HMJ G;  3FRN A;  3ZH7 A;  5KKU A;  3RD7 A;  4U3V A;  1OHF A;  3EL6 A;  3KG6 A;  3HRR A;  3B18 A;  4R4U A;  5E1V A;  2VKZ G;  4LN9 A;  3ZH7 B;  3HRQ A;  4OOC A;  4QFW A;  3ZH6 A;  3RQB A; 
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