5F1MA

Crystal structure of serine/threonine phosphatase stp1 from staphylococcus aureus
Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
254
structure length
254
Chain Sequence
IEGRHMELGTMLEAQFFTDTGQHRDKNEDAGGIFYNQTNQQLLVLCDGMGGHKAGEVASKFVTDELKSRFEAENLIEQHQAENWLRNNIKDINFQLYHYAQENAEYKGMGTTCVCALVFEKSVVIANVGDSRAYVINSRQIEQITSDHSFVNHLVLTGQITPEEAFTHPQRNIITKVMGTDKRVSPDLFIKRLNFYDYLLLNSDGLTDYVKDNEIKRLLVKEGTIEDHGDQLMQLALDNHSKDNVTFILAAIEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (11-14)TI3 (39-42)EMPTYTI2 (26-29)AH5 (202-210)S3 (31-38)TIV1 (42-45)AH2 (71-92)S5 (112-118)AH1 (45-62)TI4 (109-112)3H1 (68-70)3H2 (94-96)TIV3 (183-186)TII1 (96-99)S4 (101-108)S8 (177-182)S7 (130-133)TI5 (127-130)S6 (122-127)TI11 (197-200)TI9 (195-198)AH3 (140-146)S9 (188-192)AH4 (152-157)TVIII1 (171-174)TI7 (160-163)TIV2 (164-167)TII2 (167-170)AH6 (215-229)TI10 (196-199)TI8 (193-196)TIV4 (194-197)TI6 (158-161)S10 (235-241)S2 (19-25)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Staphylococcus aureus
publication title Structure-Based Identification of a Potent Inhibitor Targeting Stp1-Mediated Virulence Regulation in Staphylococcus aureus
pubmed doi rcsb
molecule keywords Phosphorylated protein phosphatase
total genus 78
structure length 254
sequence length 254
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2015-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13672 PP2C_2 Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 5f1mA00
2P8EA 3RT0A 4LG5B 1A6QA 3T9QA 3D8KA 2I0OA 4LGAB 3T91A 2PNQA 4N0GA 4DA1A 5D2UA 4WVOB 2IQ1A 4RAFA 3UJLB 3ES2A 3ZVUB 4LA7B 3RNRA 3PU9A 2J4OA 2CM1A 1TXOA 2I44A 4YZHA 2J82A 4YZGA 3KE6A 3UJGB 3NMVB 3QN1B 3KDJB 3W45A 2XZVA 4OICB 2ISNA 2JFRA 4RA2A 3F79A 3FXOA 2PK0A 2POMA 4RAGA 3W43A 3NMTB 3KB3B 3FXMA 5F1MA 3W40A 3NMNB 3EQ2A 2JFTA 3UJKA 2J86A 5ITIA 2POPA 3N3CA 2Y09A 3W44A 4JNDA 4DS8B 3JRQA 5JO2B 2V06A 3ZT9A 3FXLA 3FXKA 2JFSA 2IRMA 3FXJA 3W41A 3W42A 3MQ3A 5JO1B 4LGBB
chains in the Genus database with same CATH superfamily
2P8EA 3RT0A 4LG5B 4IIKA 1A6QA 3T9QA 3D8KA 2I0OA 4LGAB 3T91A 2PNQA 4N0GA 4DA1A 5D2UA 4WVOB 2IQ1A 4RAFA 3UJLB 3ES2A 3ZVUB 4LA7B 3RNRA 3PU9A 2J4OA 2CM1A 1TXOA 2I44A 4YZHA 2J82A 4YZGA 3KE6A 3UJGB 3NMVB 3QN1B 3KDJB 3W45A 2XZVA 4OICB 2ISNA 2JFRA 4RA2A 3F79A 3FXOA 2PK0A 2POMA 4RAGA 3W43A 3NMTB 3KB3B 3FXMA 5F1MA 3W40A 3NMNB 3EQ2A 2JFTA 3UJKA 2J86A 5ITIA 2POPA 3N3CA 2Y09A 3W44A 4JNDA 4DS8B 3JRQA 5JO2B 2V06A 3ZT9A 4IIPA 3FXLA 3FXKA 2JFSA 2IRMA 3FXJA 3W41A 3W42A 3MQ3A 5JO1B 4LGBB
chains in the Genus database with same CATH topology
2P8EA 3RT0A 4LG5B 1A6QA 3T9QA 3D8KA 2I0OA 4LGAB 3T91A 2PNQA 4N0GA 4DA1A 5D2UA 4WVOB 2IQ1A 4RAFA 3UJLB 3ES2A 3ZVUB 4LA7B 3RNRA 3PU9A 2J4OA 2CM1A 1TXOA 2I44A 4YZHA 2J82A 4YZGA 3KE6A 3UJGB 3NMVB 3QN1B 3KDJB 3W45A 2XZVA 4OICB 2ISNA 2JFRA 4RA2A 3F79A 3FXOA 2PK0A 2POMA 4RAGA 3W43A 3NMTB 3KB3B 3FXMA 5F1MA 3W40A 3NMNB 3EQ2A 2JFTA 3UJKA 2J86A 5ITIA 2POPA 3N3CA 2Y09A 3W44A 4JNDA 4DS8B 3JRQA 5JO2B 2V06A 3ZT9A 3FXLA 3FXKA 2JFSA 2IRMA 3FXJA 3W41A 3W42A 3MQ3A 5JO1B 4LGBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P8E A;  3RT0 A;  4LG5 B;  1A6Q A;  3T9Q A;  3D8K A;  2I0O A;  4LGA B;  3T91 A;  2PNQ A;  4N0G A;  4DA1 A;  5D2U A;  4WVO B;  2IQ1 A;  4RAF A;  3UJL B;  3ES2 A;  3ZVU B;  4LA7 B;  3RNR A;  3PU9 A;  2J4O A;  2CM1 A;  1TXO A;  2I44 A;  4YZH A;  2J82 A;  4YZG A;  3KE6 A;  3UJG B;  3NMV B;  3QN1 B;  3KDJ B;  3W45 A;  2XZV A;  4OIC B;  2ISN A;  2JFR A;  4RA2 A;  3F79 A;  3FXO A;  2PK0 A;  2POM A;  4RAG A;  3W43 A;  3NMT B;  3KB3 B;  3FXM A;  5F1M A;  3W40 A;  3NMN B;  3EQ2 A;  2JFT A;  3UJK A;  2J86 A;  5ITI A;  2POP A;  3N3C A;  2Y09 A;  3W44 A;  4JND A;  4DS8 B;  3JRQ A;  5JO2 B;  2V06 A;  3ZT9 A;  3FXL A;  3FXK A;  2JFS A;  2IRM A;  3FXJ A;  3W41 A;  3W42 A;  3MQ3 A;  5JO1 B;  4LGB B; 
#chains in the Genus database with same CATH topology
 2P8E A;  3RT0 A;  4LG5 B;  4IIK A;  1A6Q A;  3T9Q A;  3D8K A;  2I0O A;  4LGA B;  3T91 A;  2PNQ A;  4N0G A;  4DA1 A;  5D2U A;  4WVO B;  2IQ1 A;  4RAF A;  3UJL B;  3ES2 A;  3ZVU B;  4LA7 B;  3RNR A;  3PU9 A;  2J4O A;  2CM1 A;  1TXO A;  2I44 A;  4YZH A;  2J82 A;  4YZG A;  3KE6 A;  3UJG B;  3NMV B;  3QN1 B;  3KDJ B;  3W45 A;  2XZV A;  4OIC B;  2ISN A;  2JFR A;  4RA2 A;  3F79 A;  3FXO A;  2PK0 A;  2POM A;  4RAG A;  3W43 A;  3NMT B;  3KB3 B;  3FXM A;  5F1M A;  3W40 A;  3NMN B;  3EQ2 A;  2JFT A;  3UJK A;  2J86 A;  5ITI A;  2POP A;  3N3C A;  2Y09 A;  3W44 A;  4JND A;  4DS8 B;  3JRQ A;  5JO2 B;  2V06 A;  3ZT9 A;  4IIP A;  3FXL A;  3FXK A;  2JFS A;  2IRM A;  3FXJ A;  3W41 A;  3W42 A;  3MQ3 A;  5JO1 B;  4LGB B; 
#chains in the Genus database with same CATH homology
 2P8E A;  3RT0 A;  4LG5 B;  1A6Q A;  3T9Q A;  3D8K A;  2I0O A;  4LGA B;  3T91 A;  2PNQ A;  4N0G A;  4DA1 A;  5D2U A;  4WVO B;  2IQ1 A;  4RAF A;  3UJL B;  3ES2 A;  3ZVU B;  4LA7 B;  3RNR A;  3PU9 A;  2J4O A;  2CM1 A;  1TXO A;  2I44 A;  4YZH A;  2J82 A;  4YZG A;  3KE6 A;  3UJG B;  3NMV B;  3QN1 B;  3KDJ B;  3W45 A;  2XZV A;  4OIC B;  2ISN A;  2JFR A;  4RA2 A;  3F79 A;  3FXO A;  2PK0 A;  2POM A;  4RAG A;  3W43 A;  3NMT B;  3KB3 B;  3FXM A;  5F1M A;  3W40 A;  3NMN B;  3EQ2 A;  2JFT A;  3UJK A;  2J86 A;  5ITI A;  2POP A;  3N3C A;  2Y09 A;  3W44 A;  4JND A;  4DS8 B;  3JRQ A;  5JO2 B;  2V06 A;  3ZT9 A;  3FXL A;  3FXK A;  2JFS A;  2IRM A;  3FXJ A;  3W41 A;  3W42 A;  3MQ3 A;  5JO1 B;  4LGB B; 
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