5JO1 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	321
structure length	299
Chain Sequence	CIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 299 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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299 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein/hydrolase
source organism	Arabidopsis thaliana
publication title	Co-evolution of Hormone Metabolism and Signaling Networks Expands Plant Adaptive Plasticity. pubmed doi rcsb
molecule keywords	Protein phosphatase 2C 16
total genus	91
structure length	299
sequence length	321
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2016-05-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	5jo1B00

3FXMA 3JRQA 3FXKA 3W43A 2XZVA 4YZHA 3UJGB 2I0OA 4YZGA 3W45A 2JFRA 2POMA 5JO1B 5D2UA 3ZVUB 5JO2B 2POPA 2J4OA 2IRMA 3N3CA 1A6QA 4LGBB 3PU9A 3W41A 4LA7B 3NMTB 3F79A 3EQ2A 3KE6A 4RAFA 4DA1A 2PK0A 2Y09A 4RAGA 2V06A 5F1MA 3W44A 3FXLA 3QN1B 4LGAB 4N0GA 3T9QA 2P8EA 3ES2A 1TXOA 3FXOA 4LG5B 3UJKA 3ZT9A 2CM1A 2IQ1A 3T91A 3RNRA 4RA2A 4JNDA 2J86A 2JFSA 3NMNB 3W42A 2PNQA 4DS8B 3MQ3A 3NMVB 3UJLB 4WVOB 5ITIA 3RT0A 2J82A 2I44A 3FXJA 2ISNA 3W40A 3KDJB 3KB3B 4OICB 3D8KA 2JFTA
chains in the Genus database with same CATH superfamily

3FXMA 3JRQA 3FXKA 3W43A 2XZVA 4YZHA 3UJGB 2I0OA 4YZGA 3W45A 2JFRA 2POMA 5JO1B 4IIPA 5D2UA 3ZVUB 5JO2B 2POPA 2J4OA 2IRMA 3N3CA 1A6QA 4LGBB 3PU9A 3W41A 4LA7B 3NMTB 3F79A 3EQ2A 3KE6A 4RAFA 4DA1A 2PK0A 2Y09A 4RAGA 2V06A 5F1MA 3W44A 3FXLA 3QN1B 4IIKA 4LGAB 4N0GA 3T9QA 2P8EA 3ES2A 1TXOA 3FXOA 4LG5B 3UJKA 3ZT9A 2CM1A 2IQ1A 3T91A 3RNRA 4RA2A 4JNDA 2J86A 2JFSA 3NMNB 3W42A 2PNQA 4DS8B 3MQ3A 3NMVB 3UJLB 4WVOB 5ITIA 3RT0A 2J82A 2I44A 3FXJA 2ISNA 3W40A 3KDJB 3KB3B 4OICB 3D8KA 2JFTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FXM A;  3JRQ A;  3FXK A;  3W43 A;  2XZV A;  4YZH A;  3UJG B;  2I0O A;  4YZG A;  3W45 A;  2JFR A;  2POM A;  5JO1 B;  5D2U A;  3ZVU B;  5JO2 B;  2POP A;  2J4O A;  2IRM A;  3N3C A;  1A6Q A;  4LGB B;  3PU9 A;  3W41 A;  4LA7 B;  3NMT B;  3F79 A;  3EQ2 A;  3KE6 A;  4RAF A;  4DA1 A;  2PK0 A;  2Y09 A;  4RAG A;  2V06 A;  5F1M A;  3W44 A;  3FXL A;  3QN1 B;  4LGA B;  4N0G A;  3T9Q A;  2P8E A;  3ES2 A;  1TXO A;  3FXO A;  4LG5 B;  3UJK A;  3ZT9 A;  2CM1 A;  2IQ1 A;  3T91 A;  3RNR A;  4RA2 A;  4JND A;  2J86 A;  2JFS A;  3NMN B;  3W42 A;  2PNQ A;  4DS8 B;  3MQ3 A;  3NMV B;  3UJL B;  4WVO B;  5ITI A;  3RT0 A;  2J82 A;  2I44 A;  3FXJ A;  2ISN A;  3W40 A;  3KDJ B;  3KB3 B;  4OIC B;  3D8K A;  2JFT A; 
#chains in the Genus database with same CATH topology
 3FXM A;  3JRQ A;  3FXK A;  3W43 A;  2XZV A;  4YZH A;  3UJG B;  2I0O A;  4YZG A;  3W45 A;  2JFR A;  2POM A;  5JO1 B;  4IIP A;  5D2U A;  3ZVU B;  5JO2 B;  2POP A;  2J4O A;  2IRM A;  3N3C A;  1A6Q A;  4LGB B;  3PU9 A;  3W41 A;  4LA7 B;  3NMT B;  3F79 A;  3EQ2 A;  3KE6 A;  4RAF A;  4DA1 A;  2PK0 A;  2Y09 A;  4RAG A;  2V06 A;  5F1M A;  3W44 A;  3FXL A;  3QN1 B;  4IIK A;  4LGA B;  4N0G A;  3T9Q A;  2P8E A;  3ES2 A;  1TXO A;  3FXO A;  4LG5 B;  3UJK A;  3ZT9 A;  2CM1 A;  2IQ1 A;  3T91 A;  3RNR A;  4RA2 A;  4JND A;  2J86 A;  2JFS A;  3NMN B;  3W42 A;  2PNQ A;  4DS8 B;  3MQ3 A;  3NMV B;  3UJL B;  4WVO B;  5ITI A;  3RT0 A;  2J82 A;  2I44 A;  3FXJ A;  2ISN A;  3W40 A;  3KDJ B;  3KB3 B;  4OIC B;  3D8K A;  2JFT A; 
#chains in the Genus database with same CATH homology
 3FXM A;  3JRQ A;  3FXK A;  3W43 A;  2XZV A;  4YZH A;  3UJG B;  2I0O A;  4YZG A;  3W45 A;  2JFR A;  2POM A;  5JO1 B;  5D2U A;  3ZVU B;  5JO2 B;  2POP A;  2J4O A;  2IRM A;  3N3C A;  1A6Q A;  4LGB B;  3PU9 A;  3W41 A;  4LA7 B;  3NMT B;  3F79 A;  3EQ2 A;  3KE6 A;  4RAF A;  4DA1 A;  2PK0 A;  2Y09 A;  4RAG A;  2V06 A;  5F1M A;  3W44 A;  3FXL A;  3QN1 B;  4LGA B;  4N0G A;  3T9Q A;  2P8E A;  3ES2 A;  1TXO A;  3FXO A;  4LG5 B;  3UJK A;  3ZT9 A;  2CM1 A;  2IQ1 A;  3T91 A;  3RNR A;  4RA2 A;  4JND A;  2J86 A;  2JFS A;  3NMN B;  3W42 A;  2PNQ A;  4DS8 B;  3MQ3 A;  3NMV B;  3UJL B;  4WVO B;  5ITI A;  3RT0 A;  2J82 A;  2I44 A;  3FXJ A;  2ISN A;  3W40 A;  3KDJ B;  3KB3 B;  4OIC B;  3D8K A;  2JFT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5JO1B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations