5KKU | Genus

Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	78
sequence length	294
structure length	286
Chain Sequence	DQVKTFLQKISHTNYIVRDHRVHQIRVLPGVTLIDMLYRLAAGYLGERPIELRQIIFKQPVVTSEEFDKHLYVTFTPARDSWKVEITSEKAKNGTPLGGNRDENMECQLYLQEDAPRAKELNIEAFMKNASRKWDMHDIYGIARRSHIEHGEFMKNEGAVYQLQDKEELMELTLSDLAEGFREKFKAHPAFLDASTLAGSSFALPYIPFMIDRFCMYQPFPKTIYTYSAKNSRTESGVSDSEPDVYSADFTIYDRAGNVLAECEKLTVKRVRQANMITHLEHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Bacillus amyloliquefaciens
publication title	A Dehydratase Provides Insights into Split Bimodules and Polypeptide Docking in trans-AT Polyketide Synthases rcsb
molecule keywords	Polyketide synthase type I
total genus	78
structure length	286
sequence length	294
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2016-06-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14765	PS-DH	Polyketide synthase dehydratase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.129.110	Alpha Beta	Roll	Thiol Ester Dehydrase; Chain A	Thiol Ester Dehydrase; Chain A	5kkuA00

3HRRA 3KG6A 5BP3A 5KKUA 3EL6A 5E1VA 5BP2A 4OOCA 4LN9A 2VZ8A 2VZ9A 3KG9A 4KC5A 4U3VA 3KG7A 3HRQA
chains in the Genus database with same CATH superfamily

1WLVA 4A0XA 2HX5A 2F41A 2OKHA 4RLUB 4A0ZA 3R3DA 1Q4UA 1Q4TA 1VH9A 2AV9A 3P2QA 4MOCA 2CWZA 3U0AA 3B7JA 2O6BA 3KUWA 3KVIA 5EGJA 3CJYA 4W78B 3F5OA 4KEHA 2EGJA 2Q2BA 3BJKA 3DOYA 3LW3A 3DP1A 1Z6BA 3LBBA 4RV2B 5SZZA 3CK1A 4B0IA 4ZW0A 1S5UA 2XEMA 1SH8A 2C2IA 3P2RA 2FUJA 4ZRBA 1C8UA 3BNVA 3EXZA 4HZOA 5HD6A 4A0YA 2W3XA 4LN9A 1YOCA 4R4UA 4B0BA 3R34A 4B0JA 1PSUA 3HRRA 3P3FA 4HZNA 5F6RA 2CYEA 3WEWA 2FS2A 4RLJA 1LO8A 3KV7A 2HLJA 4XY5A 3AZAA 2QQ2A 2OKIA 1PN4A 1OHFA 3KHPA 3KUVA 3QY3A 3R3CA 3KVZA 4K4CA 1YLIA 3FRNA 3KX8A 4MTUA 4MZQA 4FFUA 4RLWA 3KV8A 2HBOA 3B7KA 3D6LA 5T07A 3S6PA 3R35A 5BP2A 3DP2A 3SPSA 3ZH7A 4GAHA 5T06A 3DP3A 2O6UA 4OOBA 2Q78A 5DM5A 2GF6A 3HRQA 2OV9A 4XY6A 2OAFA 1ZHGA 5KKUA 5EGKA 1ZKIA 2GLPA 3AZBA 1VH5A 1VPMA 4E3EA 3LBEA 2B6EA 3DKZA 1LO9A 4RLUA 4WNBB 3Q62A 1T82A 4I4JA 5T02A 5HWFA 4GAKA 2PRXA 3R37A 5EGLA 3P3IA 5EO2A 4I45A 2F3XA 3B18A 3KH8A 3IR3A 2CY9A 5BUWA 3BBJA 3D6XA 1J1YA 3KG7A 4W78A 2DSLA 4QD8A 4RV2A 2ESSA 2OWNA 3LMBA 5BP3A 3EL6A 1MKBA 3GEKA 4RLTB 4AE7A 5BUXA 4K4BA 3RQBA 1PN2A 1Q4SA 4QD7A 3KG9A 4RMMA 4B8UA 4I83A 2QQPA 2UV8G 5SZVA 3LZ7A 4MOBA 4CL6A 5SZUA 3AZ9A 5HMBA 2EGRA 4B0CA 4AE8A 1IQ6A 5EO4A 4IENA 1VI8A 3KX7A 3R3BA 4H4GA 4ZRFA 3HMJG 2B3MA 2VZ9A 4ZV3A 3HM0A 2O5UA 3LWGA 1MKAA 3HDUA 3R3FA 2NUJA 3ED0A 3R36A 4I82A 3AZ8A 4K00A 2OIWA 4K02A 5KL9A 1TBUA 3ESIA 3KVUA 1WLUA 1IXLA 3R87A 3KG8A 3OMLA 3R32A 4M20A 4ORDA 3E1EA 4QD9A 2PFCA 4FQ9A 3ZH5A 3R3AA 3E29A 1NJKA 1S9CA 1U1ZA 5DIOA 2QWZA 4OOCA 3S4KA 1BVQA 3K67A 3NWZA 3P2SA 4QDAA 1WM6A 5CPGA 3D04A 4K4DA 2PZHA 4RLJB 4NCPA 2GLLA 3DOZA 3KW1A 5E1VA 2H4UA 2GVHA 3RD7A 1WN3A 3F1TA 4WNBA 2EISA 3TEAA 2PIMA 3CF9A 5HMCA 2GLVA 1Z54A 2F0XA 3DP0A 3KG6A 4ZJBA 1Q6WA 2O6TA 4RLWB 4YBVA 5BUYA 4HZPA 3E8PA 4K4AA 4A12A 4R9ZA 2VZ8A 4KC5A 2XFLA 4U3VA 5BYUA 3ZH7B 5EP5A 4RLTA 5HZ4A 3QOOA 4QFWA 3ZH6A 2GLMA 2VKZG 2V1OA 4QDBA 5SZYA 4K49A 2EGIA 1SBKA 1LO7A 3CF8A 1Y7UA 1SC0A 2BI0A
chains in the Genus database with same CATH topology

5BP3A 3EL6A 1OHFA 4OOCA 3RQBA 3FRNA 3KG9A 2QQPA 2UV8G 3U0AA 3CJYA 3S6PA 5E1VA 5BP2A 3RD7A 3ZH7A 3HMJG 2VZ9A 3HRQA 3KG6A 5KKUA 4R9ZA 4LN9A 2VZ8A 4KC5A 4U3VA 4R4UA 3ZH7B 4QFWA 3KG8A 3HRRA 3ZH6A 2VKZG 2PFCA 3ZH5A 3B18A 3BBJA 3KG7A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3HRR A;  3KG6 A;  5BP3 A;  5KKU A;  3EL6 A;  5E1V A;  5BP2 A;  4OOC A;  4LN9 A;  2VZ8 A;  2VZ9 A;  3KG9 A;  4KC5 A;  4U3V A;  3KG7 A;  3HRQ A; 
#chains in the Genus database with same CATH topology
 1WLV A;  4A0X A;  2HX5 A;  2F41 A;  2OKH A;  4RLU B;  4A0Z A;  3R3D A;  1Q4U A;  1Q4T A;  1VH9 A;  2AV9 A;  3P2Q A;  4MOC A;  2CWZ A;  3U0A A;  3B7J A;  2O6B A;  3KUW A;  3KVI A;  5EGJ A;  3CJY A;  4W78 B;  3F5O A;  4KEH A;  2EGJ A;  2Q2B A;  3BJK A;  3DOY A;  3LW3 A;  3DP1 A;  1Z6B A;  3LBB A;  4RV2 B;  5SZZ A;  3CK1 A;  4B0I A;  4ZW0 A;  1S5U A;  2XEM A;  1SH8 A;  2C2I A;  3P2R A;  2FUJ A;  4ZRB A;  1C8U A;  3BNV A;  3EXZ A;  4HZO A;  5HD6 A;  4A0Y A;  2W3X A;  4LN9 A;  1YOC A;  4R4U A;  4B0B A;  3R34 A;  4B0J A;  1PSU A;  3HRR A;  3P3F A;  4HZN A;  5F6R A;  2CYE A;  3WEW A;  2FS2 A;  4RLJ A;  1LO8 A;  3KV7 A;  2HLJ A;  4XY5 A;  3AZA A;  2QQ2 A;  2OKI A;  1PN4 A;  1OHF A;  3KHP A;  3KUV A;  3QY3 A;  3R3C A;  3KVZ A;  4K4C A;  1YLI A;  3FRN A;  3KX8 A;  4MTU A;  4MZQ A;  4FFU A;  4RLW A;  3KV8 A;  2HBO A;  3B7K A;  3D6L A;  5T07 A;  3S6P A;  3R35 A;  5BP2 A;  3DP2 A;  3SPS A;  3ZH7 A;  4GAH A;  5T06 A;  3DP3 A;  2O6U A;  4OOB A;  2Q78 A;  5DM5 A;  2GF6 A;  3HRQ A;  2OV9 A;  4XY6 A;  2OAF A;  1ZHG A;  5KKU A;  5EGK A;  1ZKI A;  2GLP A;  3AZB A;  1VH5 A;  1VPM A;  4E3E A;  3LBE A;  2B6E A;  3DKZ A;  1LO9 A;  4RLU A;  4WNB B;  3Q62 A;  1T82 A;  4I4J A;  5T02 A;  5HWF A;  4GAK A;  2PRX A;  3R37 A;  5EGL A;  3P3I A;  5EO2 A;  4I45 A;  2F3X A;  3B18 A;  3KH8 A;  3IR3 A;  2CY9 A;  5BUW A;  3BBJ A;  3D6X A;  1J1Y A;  3KG7 A;  4W78 A;  2DSL A;  4QD8 A;  4RV2 A;  2ESS A;  2OWN A;  3LMB A;  5BP3 A;  3EL6 A;  1MKB A;  3GEK A;  4RLT B;  4AE7 A;  5BUX A;  4K4B A;  3RQB A;  1PN2 A;  1Q4S A;  4QD7 A;  3KG9 A;  4RMM A;  4B8U A;  4I83 A;  2QQP A;  2UV8 G;  5SZV A;  3LZ7 A;  4MOB A;  4CL6 A;  5SZU A;  3AZ9 A;  5HMB A;  2EGR A;  4B0C A;  4AE8 A;  1IQ6 A;  5EO4 A;  4IEN A;  1VI8 A;  3KX7 A;  3R3B A;  4H4G A;  4ZRF A;  3HMJ G;  2B3M A;  2VZ9 A;  4ZV3 A;  3HM0 A;  2O5U A;  3LWG A;  1MKA A;  3HDU A;  3R3F A;  2NUJ A;  3ED0 A;  3R36 A;  4I82 A;  3AZ8 A;  4K00 A;  2OIW A;  4K02 A;  5KL9 A;  1TBU A;  3ESI A;  3KVU A;  1WLU A;  1IXL A;  3R87 A;  3KG8 A;  3OML A;  3R32 A;  4M20 A;  4ORD A;  3E1E A;  4QD9 A;  2PFC A;  4FQ9 A;  3ZH5 A;  3R3A A;  3E29 A;  1NJK A;  1S9C A;  1U1Z A;  5DIO A;  2QWZ A;  4OOC A;  3S4K A;  1BVQ A;  3K67 A;  3NWZ A;  3P2S A;  4QDA A;  1WM6 A;  5CPG A;  3D04 A;  4K4D A;  2PZH A;  4RLJ B;  4NCP A;  2GLL A;  3DOZ A;  3KW1 A;  5E1V A;  2H4U A;  2GVH A;  3RD7 A;  1WN3 A;  3F1T A;  4WNB A;  2EIS A;  3TEA A;  2PIM A;  3CF9 A;  5HMC A;  2GLV A;  1Z54 A;  2F0X A;  3DP0 A;  3KG6 A;  4ZJB A;  1Q6W A;  2O6T A;  4RLW B;  4YBV A;  5BUY A;  4HZP A;  3E8P A;  4K4A A;  4A12 A;  4R9Z A;  2VZ8 A;  4KC5 A;  2XFL A;  4U3V A;  5BYU A;  3ZH7 B;  5EP5 A;  4RLT A;  5HZ4 A;  3QOO A;  4QFW A;  3ZH6 A;  2GLM A;  2VKZ G;  2V1O A;  4QDB A;  5SZY A;  4K49 A;  2EGI A;  1SBK A;  1LO7 A;  3CF8 A;  1Y7U A;  1SC0 A;  2BI0 A; 
#chains in the Genus database with same CATH homology
 5BP3 A;  3EL6 A;  1OHF A;  4OOC A;  3RQB A;  3FRN A;  3KG9 A;  2QQP A;  2UV8 G;  3U0A A;  3CJY A;  3S6P A;  5E1V A;  5BP2 A;  3RD7 A;  3ZH7 A;  3HMJ G;  2VZ9 A;  3HRQ A;  3KG6 A;  5KKU A;  4R9Z A;  4LN9 A;  2VZ8 A;  4KC5 A;  4U3V A;  4R4U A;  3ZH7 B;  4QFW A;  3KG8 A;  3HRR A;  3ZH6 A;  2VKZ G;  2PFC A;  3ZH5 A;  3B18 A;  3BBJ A;  3KG7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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5KKUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations