5E17E

T. thermophilus transcription initiation complex having a rrr discriminator sequence and a nontemplate-strand length corresponding to tss selection at position 7 (rpo-ggg-7)
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (3-6)AH1 (6-12)AH3 (60-70)AH2 (16-33)AH4 (82-92)TI2 (41-44)S2 (54-56)TI3 (42-45)S1 (47-49)TIV1 (50-53)TI1 (35-38)TVIII1 (13-16)TI'1 (33-36)Updating...
connected with : NaN
molecule tags Transcription/dna/rna
source organism Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579)
publication title Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit alpha
total genus 24
structure length 94
sequence length 94
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2015-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 5e17E00
5TMFE 4Y52F 5BYHE 4A3CF 2E2IF 1YNJK 3S2HF 3GTQF 4A3KF 4BBRF 2E2HF 3HKZK 5TMCE 1ZYRE 3GTKF 4A93F 1QKLA 2JA7F 3EQLE 3HOXF 4XLNE 4A3DF 4BBSF 4YFNE 1TWFF 2WB1I 3GTGF 4YG2E 4LK0E 3HOUF 2BE5E 1Y1VF 1SFOF 3GTMF 4A3IF 5D4EE 4C3JF 4BXXF 2PMZK 1I6VE 5IPLE 3S1RF 1Y1WF 5M5XF 4AYBK 2PPBE 1TWHF 3M3YF 3GTLF 3M4OF 4ZH4E 5C4XF 3S1NF 2A6HE 4Q4ZE 4A3GF 2NVQF 2NVXF 5IYDF 3RZDF 4YFKE 4LJZE 4OIPE 3GTJF 4A3FF 4OIRE 3I4MF 3S17F 3PO3F 5IP7F 4A3JF 4MEXE 3I4NF 5M3MF 4A3MF 3S2DF 4XSZE 2JA6F 4C3HF 4A3BF 2O5IE 4G7OE 5IP9F 1SMYE 2R7ZF 3K7AF 2JA8F 1WCMF 2YU9F 1I6HF 4BY1F 4MQ9E 1YNNK 2R92F 4Q5SE 1HQME 4OIQE 2O5JE 4C3IF 3HOZF 2CW0E 4KMUE 1R9TF 5E17E 1TWCF 1TWAF 3PO2F 5C4JF 4KN4E 5E18E 3HOWF 3H0GF 2A69E 3WODE 4Y7NF 5M3FF 1TWGF 5M5YF 3H3VG 3CQZF 3S15F 3S16F 5C44F 5IYBF 4C2MF 3GTOF 4BY7F 4OINE 5FLMF 4A3EF 4MEYE 2NVYF 4G7HE 4JK1E 4X6AF 1IW7E 5D4CE 1K83F 3S14F 5M5WF 3DXJE 3HOYF 3RZOF 3S1MF 4OIOE 2WAQK 4LLGE 2A6EE 2R93F 5FJ8F 2B63F 4XSXE 5C3EF 2VUMF 5D4DE 3GTPF 4KN7E 2NVTF 1I3QF 4LK1E 3HOVF 4GZYE 3FKIF 2A68E 3S1QF 4A3LF 4G7ZE 4XLPE 4YFXE 2JA5F 1I50F 2E2JF 2Y0SI 5IYCF
chains in the Genus database with same CATH superfamily
2NVTE 5TMFE 3GTGE 1I3QE 4Y52F 3HOUE 5BYHE 4A3CF 2E2IF 1YNJK 3GTME 4A3IE 3S2HF 3GTQF 4A3KF 4BBRF 2E2HF 1I50E 5M5XE 3HKZK 5TMCE 1ZYRE 1TWHE 3GTKF 3GTLE 3M3YE 3M4OE 4A93F 1QKLA 2JA7F 3EQLE 4Y52E 3HOXF 5C4XE 4XLNE 4A3DF 4BBSF 4YFNE 1TWFF 2WB1I 3GTGF 4YG2E 2NVXE 4LK0E 5IYDE 3HOUF 2BE5E 4A3KE 4BBRE 3RZDE 2E2HE 1Y1VF 4A3FE 1SFOF 3GTMF 3S17E 3I4ME 4A3IF 5D4EE 4C3JF 4BXXF 4A3JE 2PMZK 1I6VE 3I4NE 5M3ME 4A3ME 5IPLE 3HOXE 3S1RF 5M5XF 4AYBK 1Y1WF 2PPBE 2JA6E 3H3VF 3S2DE 1EIKA 1TWHF 3M3YF 3GTLF 3M4OF 4ZH4E 5C4XF 5IP9E 3S1NF 2R7ZE 2A6HE 3K7AE 4Q4ZE 1Y1VE 1SFOE 4A3GF 4QIWK 2Y0SH 2NVXF 5IYDF 4BY1E 4C3JE 2NVQF 4BXXE 2WAQH 3RZDF 4YFKE 4LJZE 4OIPE 3GTJF 4A3FF 3S1RE 1Y1WE 4OIRE 3I4MF 3HKZH 5IP7F 3S17F 4A3JF 4MEXE 3I4NF 4C3IE 5M3MF 4A3MF 3S1NE 3S2DF 4XSZE 2JA6F 4C3HF 4A3BF 2O5IE 4G7OE 4A3GE 5IP9F 1SMYE 2NVQE 3PO2E 2R7ZF 3K7AF 2JA8F 1WCMF 3PO3E 3GTJE 2YU9F 1I6HF 4Y7NE 5IP7E 2WB1H 4MQ9E 1YNNK 4BY1F 2PMZH 5M5YE 2R92F 3S16E 4Q5SE 1HQME 4C3HE 4OIQE 4A3BE 2O5JE 4C3IF 4BY7E 5FLME 3HOZF 2CW0E 2JA8E 1WCME 4KMUE 1R9TF 5E17E 1TWCF 1TWAF 2YU9E 1I6HE 2NVYE 5C4JF 3PO2F 2R92E 4KN4E 4X6AE 5E18E 3HOWF 3H0GF 1K83E 2A69E 3WODE 4Y7NF 5M3FF 1TWGF 5M5YF 5M5WE 3CQZF 3H3VG 3S15F 3S16F 5C44F 3HOZE 5IYBF 1R9TE 5FJ8E 1TWAE 1TWCE 4C2MF 5C4JE 3GTOF 4BY7F 4OINE 5FLMF 2VUME 3HOWE 3H0GE 4A3EF 4MEYE 5M3FE 2NVYF 1TWGE 3S15E 4G7HE 3CQZE 4JK1E 4X6AF 1IW7E 5D4CE 3HOVE 5C44E 3PO3F 1K83F 4AYBH 3S14F 3FKIE 5IYBE 5M5WF 3DXJE 3HOYF 1DZFA 4C2ME 3S1QE 3RZOF 4A3LE 3GTOE 3S1MF 4OIOE 2WAQK 2JA5E 1TWFE 4LLGE 2A6EE 2R93F 5FJ8F 4QIWH 4A3EE 2E2JE 5IYCE 2B63F 4XSXE 5C3EF 2VUMF 5D4DE 3GTPF 4KN7E 4A3CE 2E2IE 3S14E 2NVTF 1I3QF 4LK1E 3GTQE 3HOYE 3S2HE 3RZOE 3HOVF 4GZYE 3S1ME 3FKIF 2A68E 2R93E 3S1QF 3GTKE 4A3LF 4G7ZE 4XLPE 4YFXE 5C3EE 2B63E 2JA5F 4A93E 2JA7E 1I50F 3GTPE 4A3DE 2E2JF 4BBSE 2Y0SI 5IYCF 2KRXA
chains in the Genus database with same CATH topology
5TMFE 4Y52F 5BYHE 4A3CF 2E2IF 1YNJK 3S2HF 3GTQF 4A3KF 4BBRF 2E2HF 3HKZK 5TMCE 1ZYRE 3GTKF 4A93F 1QKLA 2JA7F 3EQLE 3HOXF 4XLNE 4A3DF 4BBSF 4YFNE 1TWFF 2WB1I 3GTGF 4YG2E 4LK0E 3HOUF 2BE5E 1Y1VF 1SFOF 3GTMF 4A3IF 5D4EE 4C3JF 4BXXF 2PMZK 1I6VE 5IPLE 3S1RF 1Y1WF 5M5XF 4AYBK 2PPBE 1TWHF 3M3YF 3GTLF 3M4OF 4ZH4E 5C4XF 3S1NF 2A6HE 4Q4ZE 4A3GF 4QIWK 2NVQF 2NVXF 5IYDF 3RZDF 4YFKE 4LJZE 4OIPE 3GTJF 4A3FF 4OIRE 3I4MF 3S17F 3PO3F 5IP7F 4A3JF 4MEXE 3I4NF 5M3MF 4A3MF 3S2DF 4XSZE 2JA6F 4C3HF 4A3BF 2O5IE 4G7OE 5IP9F 1SMYE 2R7ZF 3K7AF 2JA8F 1WCMF 2YU9F 1I6HF 4BY1F 4MQ9E 1YNNK 2R92F 4Q5SE 1HQME 4OIQE 2O5JE 4C3IF 3HOZF 2CW0E 4KMUE 1R9TF 5E17E 1TWCF 1TWAF 3PO2F 5C4JF 4KN4E 5E18E 3HOWF 3H0GF 2A69E 3WODE 4Y7NF 5M3FF 1TWGF 5M5YF 3H3VG 3CQZF 3S15F 3S16F 5C44F 5IYBF 4C2MF 3GTOF 4BY7F 4OINE 5FLMF 4A3EF 4MEYE 2NVYF 4G7HE 4JK1E 4X6AF 1IW7E 5D4CE 1K83F 3S14F 5M5WF 3DXJE 3HOYF 3RZOF 3S1MF 4OIOE 2WAQK 4LLGE 2A6EE 2R93F 5FJ8F 2B63F 4XSXE 5C3EF 2VUMF 5D4DE 3GTPF 4KN7E 2NVTF 1I3QF 4LK1E 3HOVF 4GZYE 3FKIF 2A68E 3S1QF 4A3LF 4G7ZE 4XLPE 4YFXE 2JA5F 1I50F 2E2JF 2Y0SI 5IYCF 2KRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TMF E;  4Y52 F;  5BYH E;  4A3C F;  2E2I F;  1YNJ K;  3S2H F;  3GTQ F;  4A3K F;  4BBR F;  2E2H F;  3HKZ K;  5TMC E;  1ZYR E;  3GTK F;  4A93 F;  1QKL A;  2JA7 F;  3EQL E;  3HOX F;  4XLN E;  4A3D F;  4BBS F;  4YFN E;  1TWF F;  2WB1 I;  3GTG F;  4YG2 E;  4LK0 E;  3HOU F;  2BE5 E;  1Y1V F;  1SFO F;  3GTM F;  4A3I F;  5D4E E;  4C3J F;  4BXX F;  2PMZ K;  1I6V E;  5IPL E;  3S1R F;  1Y1W F;  5M5X F;  4AYB K;  2PPB E;  1TWH F;  3M3Y F;  3GTL F;  3M4O F;  4ZH4 E;  5C4X F;  3S1N F;  2A6H E;  4Q4Z E;  4A3G F;  2NVQ F;  2NVX F;  5IYD F;  3RZD F;  4YFK E;  4LJZ E;  4OIP E;  3GTJ F;  4A3F F;  4OIR E;  3I4M F;  3S17 F;  3PO3 F;  5IP7 F;  4A3J F;  4MEX E;  3I4N F;  5M3M F;  4A3M F;  3S2D F;  4XSZ E;  2JA6 F;  4C3H F;  4A3B F;  2O5I E;  4G7O E;  5IP9 F;  1SMY E;  2R7Z F;  3K7A F;  2JA8 F;  1WCM F;  2YU9 F;  1I6H F;  4BY1 F;  4MQ9 E;  1YNN K;  2R92 F;  4Q5S E;  1HQM E;  4OIQ E;  2O5J E;  4C3I F;  3HOZ F;  2CW0 E;  4KMU E;  1R9T F;  5E17 E;  1TWC F;  1TWA F;  3PO2 F;  5C4J F;  4KN4 E;  5E18 E;  3HOW F;  3H0G F;  2A69 E;  3WOD E;  4Y7N F;  5M3F F;  1TWG F;  5M5Y F;  3H3V G;  3CQZ F;  3S15 F;  3S16 F;  5C44 F;  5IYB F;  4C2M F;  3GTO F;  4BY7 F;  4OIN E;  5FLM F;  4A3E F;  4MEY E;  2NVY F;  4G7H E;  4JK1 E;  4X6A F;  1IW7 E;  5D4C E;  1K83 F;  3S14 F;  5M5W F;  3DXJ E;  3HOY F;  3RZO F;  3S1M F;  4OIO E;  2WAQ K;  4LLG E;  2A6E E;  2R93 F;  5FJ8 F;  2B63 F;  4XSX E;  5C3E F;  2VUM F;  5D4D E;  3GTP F;  4KN7 E;  2NVT F;  1I3Q F;  4LK1 E;  3HOV F;  4GZY E;  3FKI F;  2A68 E;  3S1Q F;  4A3L F;  4G7Z E;  4XLP E;  4YFX E;  2JA5 F;  1I50 F;  2E2J F;  2Y0S I;  5IYC F; 
#chains in the Genus database with same CATH topology
 2NVT E;  5TMF E;  3GTG E;  1I3Q E;  4Y52 F;  3HOU E;  5BYH E;  4A3C F;  2E2I F;  1YNJ K;  3GTM E;  4A3I E;  3S2H F;  3GTQ F;  4A3K F;  4BBR F;  2E2H F;  1I50 E;  5M5X E;  3HKZ K;  5TMC E;  1ZYR E;  1TWH E;  3GTK F;  3GTL E;  3M3Y E;  3M4O E;  4A93 F;  1QKL A;  2JA7 F;  3EQL E;  4Y52 E;  3HOX F;  5C4X E;  4XLN E;  4A3D F;  4BBS F;  4YFN E;  1TWF F;  2WB1 I;  3GTG F;  4YG2 E;  2NVX E;  4LK0 E;  5IYD E;  3HOU F;  2BE5 E;  4A3K E;  4BBR E;  3RZD E;  2E2H E;  1Y1V F;  4A3F E;  1SFO F;  3GTM F;  3S17 E;  3I4M E;  4A3I F;  5D4E E;  4C3J F;  4BXX F;  4A3J E;  2PMZ K;  1I6V E;  3I4N E;  5M3M E;  4A3M E;  5IPL E;  3HOX E;  3S1R F;  5M5X F;  4AYB K;  1Y1W F;  2PPB E;  2JA6 E;  3H3V F;  3S2D E;  1EIK A;  1TWH F;  3M3Y F;  3GTL F;  3M4O F;  4ZH4 E;  5C4X F;  5IP9 E;  3S1N F;  2R7Z E;  2A6H E;  3K7A E;  4Q4Z E;  1Y1V E;  1SFO E;  4A3G F;  4QIW K;  2Y0S H;  2NVX F;  5IYD F;  4BY1 E;  4C3J E;  2NVQ F;  4BXX E;  2WAQ H;  3RZD F;  4YFK E;  4LJZ E;  4OIP E;  3GTJ F;  4A3F F;  3S1R E;  1Y1W E;  4OIR E;  3I4M F;  3HKZ H;  5IP7 F;  3S17 F;  4A3J F;  4MEX E;  3I4N F;  4C3I E;  5M3M F;  4A3M F;  3S1N E;  3S2D F;  4XSZ E;  2JA6 F;  4C3H F;  4A3B F;  2O5I E;  4G7O E;  4A3G E;  5IP9 F;  1SMY E;  2NVQ E;  3PO2 E;  2R7Z F;  3K7A F;  2JA8 F;  1WCM F;  3PO3 E;  3GTJ E;  2YU9 F;  1I6H F;  4Y7N E;  5IP7 E;  2WB1 H;  4MQ9 E;  1YNN K;  4BY1 F;  2PMZ H;  5M5Y E;  2R92 F;  3S16 E;  4Q5S E;  1HQM E;  4C3H E;  4OIQ E;  4A3B E;  2O5J E;  4C3I F;  4BY7 E;  5FLM E;  3HOZ F;  2CW0 E;  2JA8 E;  1WCM E;  4KMU E;  1R9T F;  5E17 E;  1TWC F;  1TWA F;  2YU9 E;  1I6H E;  2NVY E;  5C4J F;  3PO2 F;  2R92 E;  4KN4 E;  4X6A E;  5E18 E;  3HOW F;  3H0G F;  1K83 E;  2A69 E;  3WOD E;  4Y7N F;  5M3F F;  1TWG F;  5M5Y F;  5M5W E;  3CQZ F;  3H3V G;  3S15 F;  3S16 F;  5C44 F;  3HOZ E;  5IYB F;  1R9T E;  5FJ8 E;  1TWA E;  1TWC E;  4C2M F;  5C4J E;  3GTO F;  4BY7 F;  4OIN E;  5FLM F;  2VUM E;  3HOW E;  3H0G E;  4A3E F;  4MEY E;  5M3F E;  2NVY F;  1TWG E;  3S15 E;  4G7H E;  3CQZ E;  4JK1 E;  4X6A F;  1IW7 E;  5D4C E;  3HOV E;  5C44 E;  3PO3 F;  1K83 F;  4AYB H;  3S14 F;  3FKI E;  5IYB E;  5M5W F;  3DXJ E;  3HOY F;  1DZF A;  4C2M E;  3S1Q E;  3RZO F;  4A3L E;  3GTO E;  3S1M F;  4OIO E;  2WAQ K;  2JA5 E;  1TWF E;  4LLG E;  2A6E E;  2R93 F;  5FJ8 F;  4QIW H;  4A3E E;  2E2J E;  5IYC E;  2B63 F;  4XSX E;  5C3E F;  2VUM F;  5D4D E;  3GTP F;  4KN7 E;  4A3C E;  2E2I E;  3S14 E;  2NVT F;  1I3Q F;  4LK1 E;  3GTQ E;  3HOY E;  3S2H E;  3RZO E;  3HOV F;  4GZY E;  3S1M E;  3FKI F;  2A68 E;  2R93 E;  3S1Q F;  3GTK E;  4A3L F;  4G7Z E;  4XLP E;  4YFX E;  5C3E E;  2B63 E;  2JA5 F;  4A93 E;  2JA7 E;  1I50 F;  3GTP E;  4A3D E;  2E2J F;  4BBS E;  2Y0S I;  5IYC F;  2KRX A; 
#chains in the Genus database with same CATH homology
 5TMF E;  4Y52 F;  5BYH E;  4A3C F;  2E2I F;  1YNJ K;  3S2H F;  3GTQ F;  4A3K F;  4BBR F;  2E2H F;  3HKZ K;  5TMC E;  1ZYR E;  3GTK F;  4A93 F;  1QKL A;  2JA7 F;  3EQL E;  3HOX F;  4XLN E;  4A3D F;  4BBS F;  4YFN E;  1TWF F;  2WB1 I;  3GTG F;  4YG2 E;  4LK0 E;  3HOU F;  2BE5 E;  1Y1V F;  1SFO F;  3GTM F;  4A3I F;  5D4E E;  4C3J F;  4BXX F;  2PMZ K;  1I6V E;  5IPL E;  3S1R F;  1Y1W F;  5M5X F;  4AYB K;  2PPB E;  1TWH F;  3M3Y F;  3GTL F;  3M4O F;  4ZH4 E;  5C4X F;  3S1N F;  2A6H E;  4Q4Z E;  4A3G F;  4QIW K;  2NVQ F;  2NVX F;  5IYD F;  3RZD F;  4YFK E;  4LJZ E;  4OIP E;  3GTJ F;  4A3F F;  4OIR E;  3I4M F;  3S17 F;  3PO3 F;  5IP7 F;  4A3J F;  4MEX E;  3I4N F;  5M3M F;  4A3M F;  3S2D F;  4XSZ E;  2JA6 F;  4C3H F;  4A3B F;  2O5I E;  4G7O E;  5IP9 F;  1SMY E;  2R7Z F;  3K7A F;  2JA8 F;  1WCM F;  2YU9 F;  1I6H F;  4BY1 F;  4MQ9 E;  1YNN K;  2R92 F;  4Q5S E;  1HQM E;  4OIQ E;  2O5J E;  4C3I F;  3HOZ F;  2CW0 E;  4KMU E;  1R9T F;  5E17 E;  1TWC F;  1TWA F;  3PO2 F;  5C4J F;  4KN4 E;  5E18 E;  3HOW F;  3H0G F;  2A69 E;  3WOD E;  4Y7N F;  5M3F F;  1TWG F;  5M5Y F;  3H3V G;  3CQZ F;  3S15 F;  3S16 F;  5C44 F;  5IYB F;  4C2M F;  3GTO F;  4BY7 F;  4OIN E;  5FLM F;  4A3E F;  4MEY E;  2NVY F;  4G7H E;  4JK1 E;  4X6A F;  1IW7 E;  5D4C E;  1K83 F;  3S14 F;  5M5W F;  3DXJ E;  3HOY F;  3RZO F;  3S1M F;  4OIO E;  2WAQ K;  4LLG E;  2A6E E;  2R93 F;  5FJ8 F;  2B63 F;  4XSX E;  5C3E F;  2VUM F;  5D4D E;  3GTP F;  4KN7 E;  2NVT F;  1I3Q F;  4LK1 E;  3HOV F;  4GZY E;  3FKI F;  2A68 E;  3S1Q F;  4A3L F;  4G7Z E;  4XLP E;  4YFX E;  2JA5 F;  1I50 F;  2E2J F;  2Y0S I;  5IYC F;  2KRX A; 
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