The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
94
|
structure length |
94
|
Chain Sequence |
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
pubmed doi rcsb |
| molecule keywords |
DNA-directed RNA polymerase subunit alpha
|
| molecule tags |
Transcription/dna/rna
|
| source organism |
Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579)
|
| total genus |
24
|
| structure length |
94
|
| sequence length |
94
|
| ec nomenclature |
ec
2.7.7.6: DNA-directed RNA polymerase. |
| pdb deposition date | 2015-09-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| E | PF01192 | RNA_pol_Rpb6 | RNA polymerase Rpb6 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Eukaryotic RPB6 RNA polymerase subunit | Eukaryotic RPB6 RNA polymerase subunit |
#chains in the Genus database with same CATH superfamily 4MEY E; 3S17 F; 4ZH4 E; 4G7O E; 3S15 F; 1TWG F; 3PO2 F; 4YFN E; 1I50 F; 1SFO F; 2NVX F; 4A3G F; 2PMZ K; 5E18 E; 5E17 E; 2B63 F; 5IPL E; 4A3E F; 3HKZ K; 4YFK E; 4KN4 E; 3WOD E; 5D4E E; 2WB1 I; 3CQZ F; 3EQL E; 5FLM F; 4A3I F; 3GTK F; 4A3J F; 3GTG F; 5C3E F; 2R93 F; 2A6H E; 2YU9 F; 5IP7 F; 3HOZ F; 4LK1 E; 4AYB K; 5IYD F; 2JA7 F; 2WAQ K; 3S1N F; 4BY1 F; 4C3J F; 4MEX E; 4A3K F; 1Y1W F; 5M3F F; 2E2H F; 3HOY F; 5C4X F; 4A3C F; 3FKI F; 4XSX E; 1K83 F; 2BE5 E; 5TMC E; 5TMF E; 4KMU E; 4BBR F; 5D4C E; 2Y0S I; 1Y1V F; 4XLP E; 4A3L F; 3S1R F; 4JK1 E; 4GZY E; 3H0G F; 4A3F F; 4Q4Z E; 1TWC F; 1SMY E; 4Y7N F; 1IW7 E; 2A6E E; 4LK0 E; 4YG2 E; 4C2M F; 3RZO F; 3S2H F; 5M5X F; 3I4N F; 1TWA F; 2PPB E; 3S16 F; 4G7H E; 4A3M F; 5IP9 F; 3GTQ F; 3GTL F; 1TWH F; 3GTO F; 3RZD F; 1YNN K; 4G7Z E; 4LLG E; 3S2D F; 3GTJ F; 3S1M F; 3HOX F; 4YFX E; 4C3I F; 2E2J F; 3HOU F; 4Y52 F; 5D4D E; 3HOV F; 4A3B F; 4X6A F; 3GTM F; 4BBS F; 2NVQ F; 1I3Q F; 5C4J F; 4OIP E; 1HQM E; 5IYB F; 1TWF F; 1R9T F; 4LJZ E; 3H3V G; 3DXJ E; 2A69 E; 4OIQ E; 2NVT F; 4BXX F; 3S14 F; 4OIN E; 1ZYR E; 2E2I F; 2O5I E; 1I6H F; 2R7Z F; 1QKL A; 4XLN E; 3K7A F; 4A3D F; 5IYC F; 3S1Q F; 1YNJ K; 2JA8 F; 4A93 F; 1I6V E; 4BY7 F; 5FJ8 F; 2A68 E; 4OIO E; 4Q5S E; 3M4O F; 2CW0 E; 5M5W F; 2JA5 F; 1WCM F; 5M3M F; 4OIR E; 3M3Y F; 2JA6 F; 3I4M F; 3GTP F; 2O5J E; 4C3H F; 3HOW F; 5BYH E; 3PO3 F; 4MQ9 E; 4XSZ E; 2VUM F; 4KN7 E; 2NVY F; 5M5Y F; 5C44 F; 2R92 F; #chains in the Genus database with same CATH topology 5FJ8 E; 4BY7 E; 3CQZ E; 4MEY E; 3S17 F; 4ZH4 E; 4G7O E; 3S15 F; 1TWG F; 3GTK E; 3PO2 F; 3M4O E; 4YFN E; 5M5W E; 1I50 F; 2JA5 E; 5M3M E; 1SFO F; 2NVX F; 4A3G F; 3M3Y E; 2JA6 E; 2PMZ K; 5E18 E; 3I4M E; 3GTP E; 5E17 E; 4C3H E; 2B63 F; 5IPL E; 2Y0S H; 3HKZ K; 4YFK E; 4KN4 E; 3WOD E; 5D4E E; 2WB1 I; 3CQZ F; 3EQL E; 5FLM F; 4A3I F; 3HOW E; 3PO3 E; 2VUM E; 3S1R E; 3GTK F; 2NVY E; 5M5Y E; 4A3E F; 5C44 E; 2R92 E; 4A3J F; 2E2H E; 3HOY E; 3GTG F; 1EIK A; 5C3E F; 3S17 E; 2A6H E; 2R93 F; 4QIW K; 2YU9 F; 5IP7 F; 3HOZ F; 3S15 E; 4LK1 E; 1TWG E; 3PO2 E; 4AYB K; 5IYD F; 1I50 E; 2JA7 F; 1SFO E; 2JA8 E; 2NVX E; 4A3G E; 2WAQ K; 3S1N F; 4BY1 F; 4C3J F; 4MEX E; 2B63 E; 4A3K F; 4A3E E; 5M3F F; 5FLM E; 4A3I E; 1Y1W F; 2E2H F; 3HOY F; 4A3C F; 5C4X F; 3FKI F; 4XSX E; 1K83 F; 2BE5 E; 2WAQ H; 5TMC E; 5TMF E; 3H3V F; 4KMU E; 4BBR F; 4A3J E; 3GTG E; 5C3E E; 5D4C E; 2Y0S I; 1Y1V F; 4XLP E; 2R93 E; 2YU9 E; 5IP7 E; 3HOZ E; 4A3L F; 3S1R F; 4JK1 E; 4GZY E; 3H0G F; 5IYD E; 2JA7 E; 4A3F F; 4Q4Z E; 1TWC F; 3GTL E; 1SMY E; 4Y7N F; 4BY1 E; 3S1N E; 1IW7 E; 2A6E E; 4LK0 E; 4C3J E; 2PMZ H; 4YG2 E; 4A3K E; 4C2M F; 5M3F E; 1Y1W E; 3RZO F; 5C4X E; 4A3C E; 3HKZ H; 3FKI E; 3S2H F; 3S1M E; 1K83 E; 5M5X F; 3I4N F; 1TWA F; 2E2J E; 2PPB E; 4BBR E; 4G7H E; 4A3M F; 5IP9 F; 3S16 F; 2KRX A; 3HOV E; 1Y1V E; 3GTL F; 3GTQ F; 4A3L E; 1TWH F; 3GTO F; 4QIW H; 1YNN K; 4G7Z E; 3RZD F; 4LLG E; 3H0G E; 3S2D F; 4AYB H; 3GTJ F; 4A3F E; 1TWC E; 3S1M F; 3HOX F; 5C4J E; 4Y7N E; 4YFX E; 4C3I F; 2E2J F; 4C2M E; 3HOU F; 3RZO E; 4Y52 F; 5D4D E; 3HOV F; 4A3B F; 3S2H E; 4X6A F; 5M5X E; 3GTM F; 3I4N E; 4BBS F; 1TWA E; 2NVT E; 2NVQ F; 3S16 E; 4A3M E; 5IP9 E; 3GTQ E; 1I3Q F; 5C4J F; 1TWH E; 4OIP E; 3RZD E; 3GTO E; 1DZF A; 3S2D E; 1HQM E; 3GTJ E; 5IYB F; 1TWF F; 1R9T F; 3HOX E; 4LJZ E; 3H3V G; 4C3I E; 3DXJ E; 2A69 E; 4OIQ E; 2NVT F; 4BXX F; 3S14 F; 4OIN E; 1ZYR E; 3HOU E; 2E2I F; 4Y52 E; 4A3B E; 4X6A E; 2O5I E; 1I6H F; 3GTM E; 4BBS E; 2R7Z F; 1QKL A; 4XLN E; 2NVQ E; 3K7A F; 4A3D F; 1WCM E; 5IYC F; 3S1Q F; 1I3Q E; 1YNJ K; 2JA8 F; 4A93 F; 1I6V E; 4BY7 F; 5FJ8 F; 2A68 E; 4OIO E; 5IYB E; 1TWF E; 1R9T E; 4Q5S E; 2WB1 H; 3M4O F; 4BXX E; 2CW0 E; 5M5W F; 2JA5 F; 3S14 E; 1WCM F; 5M3M F; 2E2I E; 4OIR E; 3M3Y F; 2JA6 F; 1I6H E; 3I4M F; 2R7Z E; 3GTP F; 2O5J E; 4C3H F; 3K7A E; 3HOW F; 5IYC E; 5BYH E; 3S1Q E; 4MQ9 E; 4XSZ E; 3PO3 F; 4A3D E; 2VUM F; 4KN7 E; 2NVY F; 5M5Y F; 4A93 E; 5C44 F; 2R92 F; #chains in the Genus database with same CATH homology 4MEY E; 3S17 F; 4ZH4 E; 4G7O E; 3S15 F; 1TWG F; 3PO2 F; 4YFN E; 1I50 F; 1SFO F; 2NVX F; 4A3G F; 2PMZ K; 5E18 E; 5E17 E; 2B63 F; 5IPL E; 4A3E F; 3HKZ K; 4YFK E; 4KN4 E; 3WOD E; 5D4E E; 2WB1 I; 3CQZ F; 3EQL E; 5FLM F; 4A3I F; 3GTK F; 4A3J F; 3GTG F; 5C3E F; 2R93 F; 2A6H E; 4QIW K; 2YU9 F; 5IP7 F; 3HOZ F; 4LK1 E; 4AYB K; 5IYD F; 2JA7 F; 2WAQ K; 3S1N F; 4BY1 F; 4C3J F; 4MEX E; 4A3K F; 1Y1W F; 5M3F F; 2E2H F; 3HOY F; 5C4X F; 4A3C F; 3FKI F; 4XSX E; 1K83 F; 2BE5 E; 5TMC E; 5TMF E; 4KMU E; 4BBR F; 5D4C E; 2Y0S I; 1Y1V F; 4XLP E; 4A3L F; 3S1R F; 4JK1 E; 4GZY E; 3H0G F; 4A3F F; 4Q4Z E; 1TWC F; 1SMY E; 4Y7N F; 1IW7 E; 2A6E E; 4LK0 E; 4YG2 E; 4C2M F; 3RZO F; 3S2H F; 5M5X F; 3I4N F; 1TWA F; 2PPB E; 3S16 F; 4G7H E; 4A3M F; 5IP9 F; 2KRX A; 3GTQ F; 3GTL F; 1TWH F; 3GTO F; 3RZD F; 1YNN K; 4G7Z E; 4LLG E; 3S2D F; 3GTJ F; 3S1M F; 3HOX F; 4YFX E; 4C3I F; 2E2J F; 3HOU F; 4Y52 F; 5D4D E; 3HOV F; 4A3B F; 4X6A F; 3GTM F; 4BBS F; 2NVQ F; 1I3Q F; 5C4J F; 4OIP E; 1HQM E; 5IYB F; 1TWF F; 1R9T F; 4LJZ E; 3H3V G; 3DXJ E; 2A69 E; 4OIQ E; 2NVT F; 4BXX F; 3S14 F; 4OIN E; 1ZYR E; 2E2I F; 2O5I E; 1I6H F; 2R7Z F; 1QKL A; 4XLN E; 3K7A F; 4A3D F; 5IYC F; 3S1Q F; 1YNJ K; 2JA8 F; 4A93 F; 1I6V E; 4BY7 F; 5FJ8 F; 2A68 E; 4OIO E; 4Q5S E; 3M4O F; 2CW0 E; 5M5W F; 2JA5 F; 1WCM F; 5M3M F; 4OIR E; 3M3Y F; 2JA6 F; 3I4M F; 3GTP F; 2O5J E; 4C3H F; 3HOW F; 5BYH E; 3PO3 F; 4MQ9 E; 4XSZ E; 2VUM F; 4KN7 E; 2NVY F; 5M5Y F; 5C44 F; 2R92 F;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
