4FO7A

Pseudomonas aeruginosa metap, in mn form
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
258
structure length
258
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
source organism Pseudomonas aeruginosa
total genus 74
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo7A00
1B59A 3FMQA 2MATA 2ADUA 4QR8A 2BWYA 4U71A 1C22A 3RVAA 1BOAA 3CB5A 4FLLA 1BN5A 2BWWA 2HOWA 2BB7A 2GZ5A 4MATA 2EVCA 4S2RP 1W2MA 2GU5A 2GA2A 3BIQA 1QZYA 2GG8A 3RORA 2P98A 1C27A 5CIKA 3CB6A 4RGZ1 1C24A 2BWUA 4FLIA 4FKCA 4FUKA 1O0XA 3PKEA 4U6JA 4U6ZA 4U1BA 3Q6DA 2Q96A 3TB5A 5D6FA 2Q92A 2BWSA 3PKBA 3FM3A 1WN1A 1YW7A 3L24A 4FLJA 4FLKA 4IKSA 1WKMA 2GG5A 2P9AA 4U69A 2EVOA 1QXYA 2B3KA 4U70A 2Q8KA 2GG3A 3MATA 2BWTA 3FMRA 4R60A 5FCHA 2Q94A 3L7GA 2BHCA 3IG4A 2OKNA 1YW9A 4PV4A 1R5HA 4PNCA 4S01A 1XNZA 2Q95A 3PKCA 1YJ3A 2V3ZA 5CDLA 3MR1A 3BIPA 2V3XA 4JUQA 4S00A 4ZNGA 2GTXA 1Y1NA 3MX6A 2Q93A 3IU7A 4IU6A 2BH3A 2EVMA 2BHAA 1KQ0A 5JFRA 1MATA 4RZYA 1M35A 1A16A 1CHMA 4ZWPA 2V6CA 1JAWA 1XGNA 1XGMA 4FO8A 4IF7A 2B3LA 3S6BA 1R5GA 1WY2A 2GG9A 3PKAA 5CDVA 4KM3A 1B6AA 4IKUA 5CE6A 1W7VA 2ZSGA 1KQ9A 2GGCA 1XGSA 1C23A 3BITA 4U75A 4IDYA 5CNXA 5JHUA 5JI6A 5CDEA 2GU4A 3CTZA 2DFIA 4HXXA 2GGBA 2GU7A 2P99A 4U76A 2BN7A 1WLRA 1C21A 2GG7A 4OOKA 1XGOA 2NQ7A 4IKTA 5D6EA 5FCFA 4U6WA 1KP0A 1WBQA 5E5BA 1YVMA 1PV9A 4FO7A 3D27A 2GG2A 1R58A 4RZZA 2EA4A 2B3HA 4U73A 4EGEA 3IU9A 3PKDA 2OAZA 4IECA 4S2TP 2GU6A 2NQ6A 1N51A 2EA2A 1WL9A 2BHDA 1WL6A 4A6WA 1QXWA 4B28A 2V3YA 2G6PA 4ZWOA 1YW8A 4U6CA 3TAVA 2GG0A 3IU8A 2BHBA 4ZWUA 4IPAA 4IKRA 2BWXA 2IW2A 4A6VA 4Z7MA 5CLSA 2BWVA 1QXZA 4U6EA
chains in the Genus database with same CATH superfamily
1B59A 3FMQA 2MATA 2ADUA 4QR8A 2BWYA 4U71A 1C22A 3RVAA 1BOAA 3CB5A 4FLLA 1BN5A 2BWWA 2HOWA 2BB7A 2GZ5A 4MATA 2EVCA 4S2RP 1W2MA 2GU5A 2GA2A 3BIQA 1QZYA 2GG8A 3RORA 2P98A 1C27A 5CIKA 3CB6A 4RGZ1 1C24A 2BWUA 4FLIA 4FKCA 4FUKA 1O0XA 3PKEA 4U6JA 4U6ZA 4U1BA 3Q6DA 2Q96A 3TB5A 5D6FA 2Q92A 2BWSA 3PKBA 3FM3A 1WN1A 1YW7A 3L24A 4FLJA 4FLKA 4IKSA 1WKMA 2GG5A 2P9AA 4U69A 2EVOA 1QXYA 2B3KA 4U70A 2Q8KA 2GG3A 3MATA 2BWTA 3FMRA 4R60A 5FCHA 2Q94A 3L7GA 2BHCA 3IG4A 2OKNA 1YW9A 4PV4A 1R5HA 4PNCA 4S01A 1XNZA 2Q95A 3PKCA 1YJ3A 2V3ZA 5CDLA 3MR1A 3BIPA 2V3XA 4JUQA 4S00A 4ZNGA 2GTXA 1Y1NA 3MX6A 2Q93A 3IU7A 4IU6A 2BH3A 2EVMA 2BHAA 1KQ0A 5JFRA 1MATA 4RZYA 1M35A 1A16A 1CHMA 4ZWPA 2V6CA 1JAWA 1XGNA 1XGMA 4FO8A 4IF7A 2B3LA 3S6BA 1R5GA 1WY2A 2GG9A 3PKAA 5CDVA 4KM3A 1B6AA 4IKUA 5CE6A 1W7VA 2ZSGA 1KQ9A 2GGCA 1XGSA 1C23A 3BITA 4U75A 4IDYA 5CNXA 5JHUA 5JI6A 5CDEA 2GU4A 3CTZA 2DFIA 4HXXA 2GGBA 2GU7A 2P99A 4U76A 2BN7A 1WLRA 1C21A 2GG7A 4OOKA 1XGOA 2NQ7A 4IKTA 5D6EA 5FCFA 4U6WA 1KP0A 1WBQA 5E5BA 1YVMA 1PV9A 4FO7A 3D27A 2GG2A 1R58A 4RZZA 2EA4A 2B3HA 4U73A 4EGEA 3IU9A 3PKDA 2OAZA 4IECA 4S2TP 2GU6A 2NQ6A 1N51A 2EA2A 1WL9A 2BHDA 1WL6A 4A6WA 1QXWA 4B28A 2V3YA 2G6PA 4ZWOA 1YW8A 4U6CA 3TAVA 2GG0A 3IU8A 2BHBA 4ZWUA 4IPAA 4IKRA 2BWXA 2IW2A 4A6VA 4Z7MA 5CLSA 2BWVA 1QXZA 4U6EA
chains in the Genus database with same CATH topology
1B59A 3FMQA 2MATA 2ADUA 4QR8A 2BWYA 4U71A 1C22A 3RVAA 1BOAA 3CB5A 4FLLA 1BN5A 2BWWA 2HOWA 2BB7A 2GZ5A 4MATA 2EVCA 4S2RP 1W2MA 2GU5A 2GA2A 3BIQA 1QZYA 2GG8A 3RORA 2P98A 1C27A 5CIKA 3CB6A 4RGZ1 1C24A 2BWUA 4FLIA 4FKCA 4FUKA 1O0XA 3PKEA 4U6JA 4U6ZA 4U1BA 3Q6DA 2Q96A 3TB5A 5D6FA 2Q92A 2BWSA 3PKBA 3FM3A 1WN1A 1YW7A 3L24A 4FLJA 4FLKA 4IKSA 1WKMA 2GG5A 2P9AA 4U69A 2EVOA 1QXYA 2B3KA 4U70A 2Q8KA 2GG3A 3MATA 2BWTA 3FMRA 4R60A 5FCHA 2Q94A 3L7GA 2BHCA 3IG4A 2OKNA 1YW9A 4PV4A 1R5HA 4PNCA 4S01A 1XNZA 2Q95A 3PKCA 1YJ3A 2V3ZA 5CDLA 3MR1A 3BIPA 2V3XA 4JUQA 4S00A 4ZNGA 2GTXA 1Y1NA 3MX6A 2Q93A 3IU7A 4IU6A 2BH3A 2EVMA 2BHAA 1KQ0A 5JFRA 1MATA 4RZYA 1M35A 1A16A 1CHMA 4ZWPA 2V6CA 1JAWA 1XGNA 1XGMA 4FO8A 4IF7A 2B3LA 3S6BA 1R5GA 1WY2A 2GG9A 3PKAA 5CDVA 4KM3A 1B6AA 4IKUA 5CE6A 1W7VA 2ZSGA 1KQ9A 2GGCA 1XGSA 1C23A 3BITA 4U75A 4IDYA 5CNXA 5JHUA 5JI6A 5CDEA 2GU4A 3CTZA 2DFIA 4HXXA 2GGBA 2GU7A 2P99A 4U76A 2BN7A 1WLRA 1C21A 2GG7A 4OOKA 1XGOA 2NQ7A 4IKTA 5D6EA 5FCFA 4U6WA 1KP0A 1WBQA 5E5BA 1YVMA 1PV9A 4FO7A 3D27A 2GG2A 1R58A 4RZZA 2EA4A 2B3HA 4U73A 4EGEA 3IU9A 3PKDA 2OAZA 4IECA 4S2TP 2GU6A 2NQ6A 1N51A 2EA2A 1WL9A 2BHDA 1WL6A 4A6WA 1QXWA 4B28A 2V3YA 2G6PA 4ZWOA 1YW8A 4U6CA 3TAVA 2GG0A 3IU8A 2BHBA 4ZWUA 4IPAA 4IKRA 2BWXA 2IW2A 4A6VA 4Z7MA 5CLSA 2BWVA 1QXZA 4U6EA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1B59 A;  3FMQ A;  2MAT A;  2ADU A;  4QR8 A;  2BWY A;  4U71 A;  1C22 A;  3RVA A;  1BOA A;  3CB5 A;  4FLL A;  1BN5 A;  2BWW A;  2HOW A;  2BB7 A;  2GZ5 A;  4MAT A;  2EVC A;  4S2R P;  1W2M A;  2GU5 A;  2GA2 A;  3BIQ A;  1QZY A;  2GG8 A;  3ROR A;  2P98 A;  1C27 A;  5CIK A;  3CB6 A;  4RGZ 1;  1C24 A;  2BWU A;  4FLI A;  4FKC A;  4FUK A;  1O0X A;  3PKE A;  4U6J A;  4U6Z A;  4U1B A;  3Q6D A;  2Q96 A;  3TB5 A;  5D6F A;  2Q92 A;  2BWS A;  3PKB A;  3FM3 A;  1WN1 A;  1YW7 A;  3L24 A;  4FLJ A;  4FLK A;  4IKS A;  1WKM A;  2GG5 A;  2P9A A;  4U69 A;  2EVO A;  1QXY A;  2B3K A;  4U70 A;  2Q8K A;  2GG3 A;  3MAT A;  2BWT A;  3FMR A;  4R60 A;  5FCH A;  2Q94 A;  3L7G A;  2BHC A;  3IG4 A;  2OKN A;  1YW9 A;  4PV4 A;  1R5H A;  4PNC A;  4S01 A;  1XNZ A;  2Q95 A;  3PKC A;  1YJ3 A;  2V3Z A;  5CDL A;  3MR1 A;  3BIP A;  2V3X A;  4JUQ A;  4S00 A;  4ZNG A;  2GTX A;  1Y1N A;  3MX6 A;  2Q93 A;  3IU7 A;  4IU6 A;  2BH3 A;  2EVM A;  2BHA A;  1KQ0 A;  5JFR A;  1MAT A;  4RZY A;  1M35 A;  1A16 A;  1CHM A;  4ZWP A;  2V6C A;  1JAW A;  1XGN A;  1XGM A;  4FO8 A;  4IF7 A;  2B3L A;  3S6B A;  1R5G A;  1WY2 A;  2GG9 A;  3PKA A;  5CDV A;  4KM3 A;  1B6A A;  4IKU A;  5CE6 A;  1W7V A;  2ZSG A;  1KQ9 A;  2GGC A;  1XGS A;  1C23 A;  3BIT A;  4U75 A;  4IDY A;  5CNX A;  5JHU A;  5JI6 A;  5CDE A;  2GU4 A;  3CTZ A;  2DFI A;  4HXX A;  2GGB A;  2GU7 A;  2P99 A;  4U76 A;  2BN7 A;  1WLR A;  1C21 A;  2GG7 A;  4OOK A;  1XGO A;  2NQ7 A;  4IKT A;  5D6E A;  5FCF A;  4U6W A;  1KP0 A;  1WBQ A;  5E5B A;  1YVM A;  1PV9 A;  4FO7 A;  3D27 A;  2GG2 A;  1R58 A;  4RZZ A;  2EA4 A;  2B3H A;  4U73 A;  4EGE A;  3IU9 A;  3PKD A;  2OAZ A;  4IEC A;  4S2T P;  2GU6 A;  2NQ6 A;  1N51 A;  2EA2 A;  1WL9 A;  2BHD A;  1WL6 A;  4A6W A;  1QXW A;  4B28 A;  2V3Y A;  2G6P A;  4ZWO A;  1YW8 A;  4U6C A;  3TAV A;  2GG0 A;  3IU8 A;  2BHB A;  4ZWU A;  4IPA A;  4IKR A;  2BWX A;  2IW2 A;  4A6V A;  4Z7M A;  5CLS A;  2BWV A;  1QXZ A;  4U6E A; 
#chains in the Genus database with same CATH topology
 1B59 A;  3FMQ A;  2MAT A;  2ADU A;  4QR8 A;  2BWY A;  4U71 A;  1C22 A;  3RVA A;  1BOA A;  3CB5 A;  4FLL A;  1BN5 A;  2BWW A;  2HOW A;  2BB7 A;  2GZ5 A;  4MAT A;  2EVC A;  4S2R P;  1W2M A;  2GU5 A;  2GA2 A;  3BIQ A;  1QZY A;  2GG8 A;  3ROR A;  2P98 A;  1C27 A;  5CIK A;  3CB6 A;  4RGZ 1;  1C24 A;  2BWU A;  4FLI A;  4FKC A;  4FUK A;  1O0X A;  3PKE A;  4U6J A;  4U6Z A;  4U1B A;  3Q6D A;  2Q96 A;  3TB5 A;  5D6F A;  2Q92 A;  2BWS A;  3PKB A;  3FM3 A;  1WN1 A;  1YW7 A;  3L24 A;  4FLJ A;  4FLK A;  4IKS A;  1WKM A;  2GG5 A;  2P9A A;  4U69 A;  2EVO A;  1QXY A;  2B3K A;  4U70 A;  2Q8K A;  2GG3 A;  3MAT A;  2BWT A;  3FMR A;  4R60 A;  5FCH A;  2Q94 A;  3L7G A;  2BHC A;  3IG4 A;  2OKN A;  1YW9 A;  4PV4 A;  1R5H A;  4PNC A;  4S01 A;  1XNZ A;  2Q95 A;  3PKC A;  1YJ3 A;  2V3Z A;  5CDL A;  3MR1 A;  3BIP A;  2V3X A;  4JUQ A;  4S00 A;  4ZNG A;  2GTX A;  1Y1N A;  3MX6 A;  2Q93 A;  3IU7 A;  4IU6 A;  2BH3 A;  2EVM A;  2BHA A;  1KQ0 A;  5JFR A;  1MAT A;  4RZY A;  1M35 A;  1A16 A;  1CHM A;  4ZWP A;  2V6C A;  1JAW A;  1XGN A;  1XGM A;  4FO8 A;  4IF7 A;  2B3L A;  3S6B A;  1R5G A;  1WY2 A;  2GG9 A;  3PKA A;  5CDV A;  4KM3 A;  1B6A A;  4IKU A;  5CE6 A;  1W7V A;  2ZSG A;  1KQ9 A;  2GGC A;  1XGS A;  1C23 A;  3BIT A;  4U75 A;  4IDY A;  5CNX A;  5JHU A;  5JI6 A;  5CDE A;  2GU4 A;  3CTZ A;  2DFI A;  4HXX A;  2GGB A;  2GU7 A;  2P99 A;  4U76 A;  2BN7 A;  1WLR A;  1C21 A;  2GG7 A;  4OOK A;  1XGO A;  2NQ7 A;  4IKT A;  5D6E A;  5FCF A;  4U6W A;  1KP0 A;  1WBQ A;  5E5B A;  1YVM A;  1PV9 A;  4FO7 A;  3D27 A;  2GG2 A;  1R58 A;  4RZZ A;  2EA4 A;  2B3H A;  4U73 A;  4EGE A;  3IU9 A;  3PKD A;  2OAZ A;  4IEC A;  4S2T P;  2GU6 A;  2NQ6 A;  1N51 A;  2EA2 A;  1WL9 A;  2BHD A;  1WL6 A;  4A6W A;  1QXW A;  4B28 A;  2V3Y A;  2G6P A;  4ZWO A;  1YW8 A;  4U6C A;  3TAV A;  2GG0 A;  3IU8 A;  2BHB A;  4ZWU A;  4IPA A;  4IKR A;  2BWX A;  2IW2 A;  4A6V A;  4Z7M A;  5CLS A;  2BWV A;  1QXZ A;  4U6E A; 
#chains in the Genus database with same CATH homology
 1B59 A;  3FMQ A;  2MAT A;  2ADU A;  4QR8 A;  2BWY A;  4U71 A;  1C22 A;  3RVA A;  1BOA A;  3CB5 A;  4FLL A;  1BN5 A;  2BWW A;  2HOW A;  2BB7 A;  2GZ5 A;  4MAT A;  2EVC A;  4S2R P;  1W2M A;  2GU5 A;  2GA2 A;  3BIQ A;  1QZY A;  2GG8 A;  3ROR A;  2P98 A;  1C27 A;  5CIK A;  3CB6 A;  4RGZ 1;  1C24 A;  2BWU A;  4FLI A;  4FKC A;  4FUK A;  1O0X A;  3PKE A;  4U6J A;  4U6Z A;  4U1B A;  3Q6D A;  2Q96 A;  3TB5 A;  5D6F A;  2Q92 A;  2BWS A;  3PKB A;  3FM3 A;  1WN1 A;  1YW7 A;  3L24 A;  4FLJ A;  4FLK A;  4IKS A;  1WKM A;  2GG5 A;  2P9A A;  4U69 A;  2EVO A;  1QXY A;  2B3K A;  4U70 A;  2Q8K A;  2GG3 A;  3MAT A;  2BWT A;  3FMR A;  4R60 A;  5FCH A;  2Q94 A;  3L7G A;  2BHC A;  3IG4 A;  2OKN A;  1YW9 A;  4PV4 A;  1R5H A;  4PNC A;  4S01 A;  1XNZ A;  2Q95 A;  3PKC A;  1YJ3 A;  2V3Z A;  5CDL A;  3MR1 A;  3BIP A;  2V3X A;  4JUQ A;  4S00 A;  4ZNG A;  2GTX A;  1Y1N A;  3MX6 A;  2Q93 A;  3IU7 A;  4IU6 A;  2BH3 A;  2EVM A;  2BHA A;  1KQ0 A;  5JFR A;  1MAT A;  4RZY A;  1M35 A;  1A16 A;  1CHM A;  4ZWP A;  2V6C A;  1JAW A;  1XGN A;  1XGM A;  4FO8 A;  4IF7 A;  2B3L A;  3S6B A;  1R5G A;  1WY2 A;  2GG9 A;  3PKA A;  5CDV A;  4KM3 A;  1B6A A;  4IKU A;  5CE6 A;  1W7V A;  2ZSG A;  1KQ9 A;  2GGC A;  1XGS A;  1C23 A;  3BIT A;  4U75 A;  4IDY A;  5CNX A;  5JHU A;  5JI6 A;  5CDE A;  2GU4 A;  3CTZ A;  2DFI A;  4HXX A;  2GGB A;  2GU7 A;  2P99 A;  4U76 A;  2BN7 A;  1WLR A;  1C21 A;  2GG7 A;  4OOK A;  1XGO A;  2NQ7 A;  4IKT A;  5D6E A;  5FCF A;  4U6W A;  1KP0 A;  1WBQ A;  5E5B A;  1YVM A;  1PV9 A;  4FO7 A;  3D27 A;  2GG2 A;  1R58 A;  4RZZ A;  2EA4 A;  2B3H A;  4U73 A;  4EGE A;  3IU9 A;  3PKD A;  2OAZ A;  4IEC A;  4S2T P;  2GU6 A;  2NQ6 A;  1N51 A;  2EA2 A;  1WL9 A;  2BHD A;  1WL6 A;  4A6W A;  1QXW A;  4B28 A;  2V3Y A;  2G6P A;  4ZWO A;  1YW8 A;  4U6C A;  3TAV A;  2GG0 A;  3IU8 A;  2BHB A;  4ZWU A;  4IPA A;  4IKR A;  2BWX A;  2IW2 A;  4A6V A;  4Z7M A;  5CLS A;  2BWV A;  1QXZ A;  4U6E A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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