4JUQA

Pseudomonas aeruginosa metap t2n mutant, in mn form
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
258
structure length
258
Chain Sequence
NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
source organism Pseudomonas aeruginosa
total genus 79
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4juqA00
3RORA 3FMRA 3Q6DA 2MATA 1C23A 1KQ0A 4ZNGA 1W7VA 2GU7A 5CDLA 4FLJA 2BWWA 4FO7A 3S6BA 1XNZA 1C27A 5CIKA 4HXXA 2V6CA 3IU7A 2ZSGA 2GG7A 4FKCA 4S00A 5CDEA 1YW7A 2OAZA 4S01A 4Z7MA 2Q8KA 4U6EA 2BWSA 3IU8A 4IF7A 4U69A 5JFRA 1C21A 2GGBA 4U71A 1YJ3A 3BITA 2GG5A 4IECA 2Q92A 1WBQA 2BWTA 2P99A 1M35A 1YVMA 2BWYA 4U70A 2EA4A 1B59A 4R60A 1R58A 2V3ZA 4RZZA 4U6ZA 3IG4A 2BWXA 1CHMA 1WY2A 2GGCA 3CB6A 5CNXA 5CE6A 2Q95A 3BIQA 2GU4A 4IKRA 3MATA 4U73A 2DFIA 5FCFA 4JUQA 4IKUA 2BWUA 1KQ9A 3TAVA 1Y1NA 4U75A 2IW2A 4RGZ1 1WKMA 2EA2A 5CDVA 4FUKA 5D6FA 1WLRA 5E5BA 1JAWA 1QXWA 3PKEA 2BWVA 1XGSA 3D27A 3PKDA 1B6AA 2B3HA 3MR1A 2Q94A 1XGNA 4IKTA 4MATA 5D6EA 3IU9A 3L24A 4S2RP 3RVAA 4FLKA 3PKAA 4ZWPA 1QXZA 1WL6A 4QR8A 4B28A 3CTZA 4FLIA 2GU5A 1BOAA 1R5HA 4OOKA 4IPAA 3L7GA 1QXYA 4U1BA 1BN5A 2BHBA 1XGMA 2EVMA 5CLSA 2B3KA 4ZWUA 2BN7A 4EGEA 2GZ5A 1QZYA 4U76A 3TB5A 1KP0A 5JI6A 2BHDA 2P9AA 3PKCA 2ADUA 1WL9A 2EVCA 2V3YA 4FLLA 4IKSA 1N51A 1R5GA 2B3LA 1PV9A 3PKBA 4FO8A 4S2TP 4ZWOA 1MATA 3FMQA 2GG3A 2GG2A 4U6CA 2G6PA 2BHAA 2GG8A 2Q93A 2NQ7A 2P98A 1YW8A 2EVOA 5FCHA 2NQ6A 1XGOA 4A6WA 1C22A 2BHCA 3FM3A 2GG0A 2GU6A 2OKNA 3BIPA 1WN1A 2BH3A 1W2MA 2BB7A 4PNCA 3MX6A 4IDYA 2GTXA 1YW9A 4U6JA 4PV4A 1A16A 1O0XA 4KM3A 2HOWA 2Q96A 3CB5A 5JHUA 4IU6A 4A6VA 2V3XA 4RZYA 1C24A 4U6WA 2GA2A 2GG9A
chains in the Genus database with same CATH superfamily
3RORA 3FMRA 3Q6DA 2MATA 1C23A 1KQ0A 4ZNGA 1W7VA 2GU7A 5CDLA 4FLJA 2BWWA 4FO7A 3S6BA 1XNZA 1C27A 5CIKA 4HXXA 2V6CA 3IU7A 2ZSGA 2GG7A 4FKCA 4S00A 5CDEA 1YW7A 2OAZA 4S01A 4Z7MA 2Q8KA 4U6EA 2BWSA 3IU8A 4IF7A 4U69A 5JFRA 1C21A 2GGBA 4U71A 1YJ3A 3BITA 2GG5A 4IECA 2Q92A 1WBQA 2BWTA 2P99A 1M35A 1YVMA 2BWYA 4U70A 2EA4A 1B59A 4R60A 1R58A 2V3ZA 4RZZA 4U6ZA 3IG4A 2BWXA 1CHMA 1WY2A 2GGCA 3CB6A 5CNXA 5CE6A 2Q95A 3BIQA 2GU4A 4IKRA 3MATA 4U73A 2DFIA 5FCFA 4JUQA 4IKUA 2BWUA 1KQ9A 3TAVA 1Y1NA 4U75A 2IW2A 4RGZ1 1WKMA 2EA2A 5CDVA 4FUKA 5D6FA 1WLRA 5E5BA 1JAWA 1QXWA 3PKEA 2BWVA 1XGSA 3D27A 3PKDA 1B6AA 2B3HA 3MR1A 2Q94A 1XGNA 4IKTA 4MATA 5D6EA 3IU9A 3L24A 4S2RP 3RVAA 4FLKA 3PKAA 4ZWPA 1QXZA 1WL6A 4QR8A 4B28A 3CTZA 4FLIA 2GU5A 1BOAA 1R5HA 4OOKA 4IPAA 3L7GA 1QXYA 4U1BA 1BN5A 2BHBA 1XGMA 2EVMA 5CLSA 2B3KA 4ZWUA 2BN7A 4EGEA 2GZ5A 1QZYA 4U76A 3TB5A 1KP0A 5JI6A 2BHDA 2P9AA 3PKCA 2ADUA 1WL9A 2EVCA 2V3YA 4FLLA 4IKSA 1N51A 1R5GA 2B3LA 1PV9A 3PKBA 4FO8A 4S2TP 4ZWOA 1MATA 3FMQA 2GG3A 2GG2A 4U6CA 2G6PA 2BHAA 2GG8A 2Q93A 2NQ7A 2P98A 1YW8A 2EVOA 5FCHA 2NQ6A 1XGOA 4A6WA 1C22A 2BHCA 3FM3A 2GG0A 2GU6A 2OKNA 3BIPA 1WN1A 2BH3A 1W2MA 2BB7A 4PNCA 3MX6A 4IDYA 2GTXA 1YW9A 4U6JA 4PV4A 1A16A 1O0XA 4KM3A 2HOWA 2Q96A 3CB5A 5JHUA 4IU6A 4A6VA 2V3XA 4RZYA 1C24A 4U6WA 2GA2A 2GG9A
chains in the Genus database with same CATH topology
3RORA 3FMRA 3Q6DA 2MATA 1C23A 1KQ0A 4ZNGA 1W7VA 2GU7A 5CDLA 4FLJA 2BWWA 4FO7A 3S6BA 1XNZA 1C27A 5CIKA 4HXXA 2V6CA 3IU7A 2ZSGA 2GG7A 4FKCA 4S00A 5CDEA 1YW7A 2OAZA 4S01A 4Z7MA 2Q8KA 4U6EA 2BWSA 3IU8A 4IF7A 4U69A 5JFRA 1C21A 2GGBA 4U71A 1YJ3A 3BITA 2GG5A 4IECA 2Q92A 1WBQA 2BWTA 2P99A 1M35A 1YVMA 2BWYA 4U70A 2EA4A 1B59A 4R60A 1R58A 2V3ZA 4RZZA 4U6ZA 3IG4A 2BWXA 1CHMA 1WY2A 2GGCA 3CB6A 5CNXA 5CE6A 2Q95A 3BIQA 2GU4A 4IKRA 3MATA 4U73A 2DFIA 5FCFA 4JUQA 4IKUA 2BWUA 1KQ9A 3TAVA 1Y1NA 4U75A 2IW2A 4RGZ1 1WKMA 2EA2A 5CDVA 4FUKA 5D6FA 1WLRA 5E5BA 1JAWA 1QXWA 3PKEA 2BWVA 1XGSA 3D27A 3PKDA 1B6AA 2B3HA 3MR1A 2Q94A 1XGNA 4IKTA 4MATA 5D6EA 3IU9A 3L24A 4S2RP 3RVAA 4FLKA 3PKAA 4ZWPA 1QXZA 1WL6A 4QR8A 4B28A 3CTZA 4FLIA 2GU5A 1BOAA 1R5HA 4OOKA 4IPAA 3L7GA 1QXYA 4U1BA 1BN5A 2BHBA 1XGMA 2EVMA 5CLSA 2B3KA 4ZWUA 2BN7A 4EGEA 2GZ5A 1QZYA 4U76A 3TB5A 1KP0A 5JI6A 2BHDA 2P9AA 3PKCA 2ADUA 1WL9A 2EVCA 2V3YA 4FLLA 4IKSA 1N51A 1R5GA 2B3LA 1PV9A 3PKBA 4FO8A 4S2TP 4ZWOA 1MATA 3FMQA 2GG3A 2GG2A 4U6CA 2G6PA 2BHAA 2GG8A 2Q93A 2NQ7A 2P98A 1YW8A 2EVOA 5FCHA 2NQ6A 1XGOA 4A6WA 1C22A 2BHCA 3FM3A 2GG0A 2GU6A 2OKNA 3BIPA 1WN1A 2BH3A 1W2MA 2BB7A 4PNCA 3MX6A 4IDYA 2GTXA 1YW9A 4U6JA 4PV4A 1A16A 1O0XA 4KM3A 2HOWA 2Q96A 3CB5A 5JHUA 4IU6A 4A6VA 2V3XA 4RZYA 1C24A 4U6WA 2GA2A 2GG9A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3ROR A;  3FMR A;  3Q6D A;  2MAT A;  1C23 A;  1KQ0 A;  4ZNG A;  1W7V A;  2GU7 A;  5CDL A;  4FLJ A;  2BWW A;  4FO7 A;  3S6B A;  1XNZ A;  1C27 A;  5CIK A;  4HXX A;  2V6C A;  3IU7 A;  2ZSG A;  2GG7 A;  4FKC A;  4S00 A;  5CDE A;  1YW7 A;  2OAZ A;  4S01 A;  4Z7M A;  2Q8K A;  4U6E A;  2BWS A;  3IU8 A;  4IF7 A;  4U69 A;  5JFR A;  1C21 A;  2GGB A;  4U71 A;  1YJ3 A;  3BIT A;  2GG5 A;  4IEC A;  2Q92 A;  1WBQ A;  2BWT A;  2P99 A;  1M35 A;  1YVM A;  2BWY A;  4U70 A;  2EA4 A;  1B59 A;  4R60 A;  1R58 A;  2V3Z A;  4RZZ A;  4U6Z A;  3IG4 A;  2BWX A;  1CHM A;  1WY2 A;  2GGC A;  3CB6 A;  5CNX A;  5CE6 A;  2Q95 A;  3BIQ A;  2GU4 A;  4IKR A;  3MAT A;  4U73 A;  2DFI A;  5FCF A;  4JUQ A;  4IKU A;  2BWU A;  1KQ9 A;  3TAV A;  1Y1N A;  4U75 A;  2IW2 A;  4RGZ 1;  1WKM A;  2EA2 A;  5CDV A;  4FUK A;  5D6F A;  1WLR A;  5E5B A;  1JAW A;  1QXW A;  3PKE A;  2BWV A;  1XGS A;  3D27 A;  3PKD A;  1B6A A;  2B3H A;  3MR1 A;  2Q94 A;  1XGN A;  4IKT A;  4MAT A;  5D6E A;  3IU9 A;  3L24 A;  4S2R P;  3RVA A;  4FLK A;  3PKA A;  4ZWP A;  1QXZ A;  1WL6 A;  4QR8 A;  4B28 A;  3CTZ A;  4FLI A;  2GU5 A;  1BOA A;  1R5H A;  4OOK A;  4IPA A;  3L7G A;  1QXY A;  4U1B A;  1BN5 A;  2BHB A;  1XGM A;  2EVM A;  5CLS A;  2B3K A;  4ZWU A;  2BN7 A;  4EGE A;  2GZ5 A;  1QZY A;  4U76 A;  3TB5 A;  1KP0 A;  5JI6 A;  2BHD A;  2P9A A;  3PKC A;  2ADU A;  1WL9 A;  2EVC A;  2V3Y A;  4FLL A;  4IKS A;  1N51 A;  1R5G A;  2B3L A;  1PV9 A;  3PKB A;  4FO8 A;  4S2T P;  4ZWO A;  1MAT A;  3FMQ A;  2GG3 A;  2GG2 A;  4U6C A;  2G6P A;  2BHA A;  2GG8 A;  2Q93 A;  2NQ7 A;  2P98 A;  1YW8 A;  2EVO A;  5FCH A;  2NQ6 A;  1XGO A;  4A6W A;  1C22 A;  2BHC A;  3FM3 A;  2GG0 A;  2GU6 A;  2OKN A;  3BIP A;  1WN1 A;  2BH3 A;  1W2M A;  2BB7 A;  4PNC A;  3MX6 A;  4IDY A;  2GTX A;  1YW9 A;  4U6J A;  4PV4 A;  1A16 A;  1O0X A;  4KM3 A;  2HOW A;  2Q96 A;  3CB5 A;  5JHU A;  4IU6 A;  4A6V A;  2V3X A;  4RZY A;  1C24 A;  4U6W A;  2GA2 A;  2GG9 A; 
#chains in the Genus database with same CATH topology
 3ROR A;  3FMR A;  3Q6D A;  2MAT A;  1C23 A;  1KQ0 A;  4ZNG A;  1W7V A;  2GU7 A;  5CDL A;  4FLJ A;  2BWW A;  4FO7 A;  3S6B A;  1XNZ A;  1C27 A;  5CIK A;  4HXX A;  2V6C A;  3IU7 A;  2ZSG A;  2GG7 A;  4FKC A;  4S00 A;  5CDE A;  1YW7 A;  2OAZ A;  4S01 A;  4Z7M A;  2Q8K A;  4U6E A;  2BWS A;  3IU8 A;  4IF7 A;  4U69 A;  5JFR A;  1C21 A;  2GGB A;  4U71 A;  1YJ3 A;  3BIT A;  2GG5 A;  4IEC A;  2Q92 A;  1WBQ A;  2BWT A;  2P99 A;  1M35 A;  1YVM A;  2BWY A;  4U70 A;  2EA4 A;  1B59 A;  4R60 A;  1R58 A;  2V3Z A;  4RZZ A;  4U6Z A;  3IG4 A;  2BWX A;  1CHM A;  1WY2 A;  2GGC A;  3CB6 A;  5CNX A;  5CE6 A;  2Q95 A;  3BIQ A;  2GU4 A;  4IKR A;  3MAT A;  4U73 A;  2DFI A;  5FCF A;  4JUQ A;  4IKU A;  2BWU A;  1KQ9 A;  3TAV A;  1Y1N A;  4U75 A;  2IW2 A;  4RGZ 1;  1WKM A;  2EA2 A;  5CDV A;  4FUK A;  5D6F A;  1WLR A;  5E5B A;  1JAW A;  1QXW A;  3PKE A;  2BWV A;  1XGS A;  3D27 A;  3PKD A;  1B6A A;  2B3H A;  3MR1 A;  2Q94 A;  1XGN A;  4IKT A;  4MAT A;  5D6E A;  3IU9 A;  3L24 A;  4S2R P;  3RVA A;  4FLK A;  3PKA A;  4ZWP A;  1QXZ A;  1WL6 A;  4QR8 A;  4B28 A;  3CTZ A;  4FLI A;  2GU5 A;  1BOA A;  1R5H A;  4OOK A;  4IPA A;  3L7G A;  1QXY A;  4U1B A;  1BN5 A;  2BHB A;  1XGM A;  2EVM A;  5CLS A;  2B3K A;  4ZWU A;  2BN7 A;  4EGE A;  2GZ5 A;  1QZY A;  4U76 A;  3TB5 A;  1KP0 A;  5JI6 A;  2BHD A;  2P9A A;  3PKC A;  2ADU A;  1WL9 A;  2EVC A;  2V3Y A;  4FLL A;  4IKS A;  1N51 A;  1R5G A;  2B3L A;  1PV9 A;  3PKB A;  4FO8 A;  4S2T P;  4ZWO A;  1MAT A;  3FMQ A;  2GG3 A;  2GG2 A;  4U6C A;  2G6P A;  2BHA A;  2GG8 A;  2Q93 A;  2NQ7 A;  2P98 A;  1YW8 A;  2EVO A;  5FCH A;  2NQ6 A;  1XGO A;  4A6W A;  1C22 A;  2BHC A;  3FM3 A;  2GG0 A;  2GU6 A;  2OKN A;  3BIP A;  1WN1 A;  2BH3 A;  1W2M A;  2BB7 A;  4PNC A;  3MX6 A;  4IDY A;  2GTX A;  1YW9 A;  4U6J A;  4PV4 A;  1A16 A;  1O0X A;  4KM3 A;  2HOW A;  2Q96 A;  3CB5 A;  5JHU A;  4IU6 A;  4A6V A;  2V3X A;  4RZY A;  1C24 A;  4U6W A;  2GA2 A;  2GG9 A; 
#chains in the Genus database with same CATH homology
 3ROR A;  3FMR A;  3Q6D A;  2MAT A;  1C23 A;  1KQ0 A;  4ZNG A;  1W7V A;  2GU7 A;  5CDL A;  4FLJ A;  2BWW A;  4FO7 A;  3S6B A;  1XNZ A;  1C27 A;  5CIK A;  4HXX A;  2V6C A;  3IU7 A;  2ZSG A;  2GG7 A;  4FKC A;  4S00 A;  5CDE A;  1YW7 A;  2OAZ A;  4S01 A;  4Z7M A;  2Q8K A;  4U6E A;  2BWS A;  3IU8 A;  4IF7 A;  4U69 A;  5JFR A;  1C21 A;  2GGB A;  4U71 A;  1YJ3 A;  3BIT A;  2GG5 A;  4IEC A;  2Q92 A;  1WBQ A;  2BWT A;  2P99 A;  1M35 A;  1YVM A;  2BWY A;  4U70 A;  2EA4 A;  1B59 A;  4R60 A;  1R58 A;  2V3Z A;  4RZZ A;  4U6Z A;  3IG4 A;  2BWX A;  1CHM A;  1WY2 A;  2GGC A;  3CB6 A;  5CNX A;  5CE6 A;  2Q95 A;  3BIQ A;  2GU4 A;  4IKR A;  3MAT A;  4U73 A;  2DFI A;  5FCF A;  4JUQ A;  4IKU A;  2BWU A;  1KQ9 A;  3TAV A;  1Y1N A;  4U75 A;  2IW2 A;  4RGZ 1;  1WKM A;  2EA2 A;  5CDV A;  4FUK A;  5D6F A;  1WLR A;  5E5B A;  1JAW A;  1QXW A;  3PKE A;  2BWV A;  1XGS A;  3D27 A;  3PKD A;  1B6A A;  2B3H A;  3MR1 A;  2Q94 A;  1XGN A;  4IKT A;  4MAT A;  5D6E A;  3IU9 A;  3L24 A;  4S2R P;  3RVA A;  4FLK A;  3PKA A;  4ZWP A;  1QXZ A;  1WL6 A;  4QR8 A;  4B28 A;  3CTZ A;  4FLI A;  2GU5 A;  1BOA A;  1R5H A;  4OOK A;  4IPA A;  3L7G A;  1QXY A;  4U1B A;  1BN5 A;  2BHB A;  1XGM A;  2EVM A;  5CLS A;  2B3K A;  4ZWU A;  2BN7 A;  4EGE A;  2GZ5 A;  1QZY A;  4U76 A;  3TB5 A;  1KP0 A;  5JI6 A;  2BHD A;  2P9A A;  3PKC A;  2ADU A;  1WL9 A;  2EVC A;  2V3Y A;  4FLL A;  4IKS A;  1N51 A;  1R5G A;  2B3L A;  1PV9 A;  3PKB A;  4FO8 A;  4S2T P;  4ZWO A;  1MAT A;  3FMQ A;  2GG3 A;  2GG2 A;  4U6C A;  2G6P A;  2BHA A;  2GG8 A;  2Q93 A;  2NQ7 A;  2P98 A;  1YW8 A;  2EVO A;  5FCH A;  2NQ6 A;  1XGO A;  4A6W A;  1C22 A;  2BHC A;  3FM3 A;  2GG0 A;  2GU6 A;  2OKN A;  3BIP A;  1WN1 A;  2BH3 A;  1W2M A;  2BB7 A;  4PNC A;  3MX6 A;  4IDY A;  2GTX A;  1YW9 A;  4U6J A;  4PV4 A;  1A16 A;  1O0X A;  4KM3 A;  2HOW A;  2Q96 A;  3CB5 A;  5JHU A;  4IU6 A;  4A6V A;  2V3X A;  4RZY A;  1C24 A;  4U6W A;  2GA2 A;  2GG9 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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