The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
97
|
structure length |
97
|
Chain Sequence |
MPFAEDKTYKYICRNFSNFCNVKVVKILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCKLVDLADEVASVYQSYQP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein
|
| molecule keywords |
Probable ATP-dependent RNA helicase DDX58
|
| publication title |
Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
33
|
| structure length |
97
|
| sequence length |
97
|
| chains with identical sequence |
J, K, L, M, N, O, P
|
| ec nomenclature | |
| pdb deposition date | 2014-03-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| I | PF16739 | CARD_2 | Caspase recruitment domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas |
#chains in the Genus database with same CATH superfamily 3MOP A; 2LWD A; 4JQW A; 4ZBW A; 4N1K A; 2DBH A; 2P1H A; 3YGS P; 3QF2 A; 1ICH A; 1WH4 A; 2MN4 A; 2YVI A; 2NZ7 A; 1D2Z B; 4NQK A; 4A2W A; 2O71 A; 2LS7 A; 4FH0 A; 1NGR A; 3CRD A; 2OF5 A; 2BBR A; 2HM2 Q; 2KM6 A; 1D2Z A; 4EWI A; 1E3Y A; 3MOP G; 2DO9 A; 1WXP A; 4N1L A; 2YU0 A; 2G7R A; 4RHW A; 2N80 A; 3J6J A; 3EZQ B; 3KAT A; 1UCP A; 2N97 A; 4UZ0 A; 4O9F A; 1E41 A; 2BBZ A; 4LWD A; 1C15 A; 3EZQ A; 1N3K A; 1Z6T A; 3YGS C; 1FAD A; 4P4H A; 1DDF A; 2L6A A; 2D96 A; 3LQR A; 2MB9 A; 2LWE A; 3MOP K; 1CY5 A; 4M9Z A; 4QOB A; 4IZ5 E; 1A1Z A; 2DBD A; 2GF5 A; 1PN5 A; 1DGN A; 2N7Z A; 3J63 A; 2KN6 A; 4F44 A; 2NAQ A; 1A1W A; 3LQQ A; 4N1J A; 2F1S A; 4M9S A; 4O6X A; 2DBF A; 3CL3 A; 3T6P A; 1YGO A; 2YGS A; 2A9I A; 2M5V A; 2MS7 A; 2N83 A; 4I16 A; 2DBG A; 2A5Y B; 2MPC A; 1WMG A; 2MS8 A; 4M9X A; 4O7Q A; 2OF5 H; 2VGQ A; 4O9L A; 2N00 A; 4P4H I; 2L9M A; 2N1F A; 2YQF A; 2B1W A; 4RHW E; 1CWW A; 4A2Q A; 4DWN A; 4D8O A; 4F42 A; 2NSN A; 2IB1 A; 4IZA B; 4IZ7 B; 4E9M A; 4JUP A; #chains in the Genus database with same CATH topology 3MOP A; 2LWD A; 4JQW A; 4ZBW A; 4N1K A; 2DBH A; 2P1H A; 3YGS P; 3QF2 A; 1ICH A; 1WH4 A; 2MN4 A; 2YVI A; 2NZ7 A; 1D2Z B; 4NQK A; 4A2W A; 2O71 A; 2LS7 A; 4FH0 A; 1NGR A; 3CRD A; 2OF5 A; 2BBR A; 2HM2 Q; 2KM6 A; 1D2Z A; 4EWI A; 1E3Y A; 3MOP G; 2DO9 A; 1WXP A; 4N1L A; 2YU0 A; 2G7R A; 4RHW A; 2N80 A; 3J6J A; 3EZQ B; 3KAT A; 1UCP A; 2N97 A; 4UZ0 A; 4O9F A; 2XV9 A; 1E41 A; 2BBZ A; 4LWD A; 1C15 A; 3EZQ A; 1N3K A; 1Z6T A; 3YGS C; 1FAD A; 4P4H A; 1DDF A; 2L6A A; 2D96 A; 3LQR A; 2MB9 A; 2LWE A; 1CY5 A; 3MOP K; 4M9Z A; 4QOB A; 4IZ5 E; 1A1Z A; 2DBD A; 2GF5 A; 1PN5 A; 1DGN A; 2N7Z A; 3J63 A; 2KN6 A; 4F44 A; 2NAQ A; 1A1W A; 3LQQ A; 4N1J A; 2F1S A; 4M9S A; 4O6X A; 2DBF A; 3CL3 A; 3T6P A; 1YGO A; 2YGS A; 2A9I A; 2M5V A; 2MS7 A; 2N83 A; 4I16 A; 2DBG A; 2A5Y B; 2MPC A; 1WMG A; 2MS8 A; 2MJM A; 4M9X A; 4O7Q A; 2OF5 H; 2VGQ A; 4O9L A; 2N00 A; 4P4H I; 2L9M A; 2N1F A; 2YQF A; 2B1W A; 4RHW E; 1CWW A; 4A2Q A; 4DWN A; 4D8O A; 4F42 A; 2NSN A; 2IB1 A; 4IZA B; 4IZ7 B; 4E9M A; 4JUP A; #chains in the Genus database with same CATH homology 3MOP A; 2LWD A; 4JQW A; 4ZBW A; 4N1K A; 2DBH A; 2P1H A; 3YGS P; 3QF2 A; 1ICH A; 1WH4 A; 2MN4 A; 2YVI A; 2NZ7 A; 1D2Z B; 4NQK A; 4A2W A; 2O71 A; 2LS7 A; 4FH0 A; 1NGR A; 3CRD A; 2OF5 A; 2BBR A; 2HM2 Q; 2KM6 A; 1D2Z A; 4EWI A; 1E3Y A; 3MOP G; 2DO9 A; 1WXP A; 4N1L A; 2YU0 A; 2G7R A; 4RHW A; 2N80 A; 3J6J A; 3EZQ B; 3KAT A; 1UCP A; 2N97 A; 4UZ0 A; 4O9F A; 2XV9 A; 1E41 A; 2BBZ A; 4LWD A; 1C15 A; 3EZQ A; 1N3K A; 1Z6T A; 3YGS C; 1FAD A; 4P4H A; 1DDF A; 2L6A A; 2D96 A; 3LQR A; 2MB9 A; 2LWE A; 1CY5 A; 3MOP K; 4M9Z A; 4QOB A; 4IZ5 E; 1A1Z A; 2DBD A; 2GF5 A; 1PN5 A; 1DGN A; 2N7Z A; 3J63 A; 2KN6 A; 4F44 A; 2NAQ A; 1A1W A; 3LQQ A; 4N1J A; 2F1S A; 4M9S A; 4O6X A; 2DBF A; 3CL3 A; 3T6P A; 1YGO A; 2YGS A; 2A9I A; 2M5V A; 2MS7 A; 2N83 A; 4I16 A; 2DBG A; 2A5Y B; 2MPC A; 1WMG A; 2MS8 A; 2MJM A; 4M9X A; 4O7Q A; 2OF5 H; 2VGQ A; 4O9L A; 2N00 A; 4P4H I; 2L9M A; 2N1F A; 2YQF A; 2B1W A; 4RHW E; 1CWW A; 4A2Q A; 4DWN A; 4D8O A; 4F42 A; 2NSN A; 2IB1 A; 4IZA B; 4IZ7 B; 4E9M A; 4JUP A;
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