1ATX | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	46
structure length	46
Chain Sequence	GAACLCKSDGPNTRGNSMSGTIWVFGCPSGWNNCEGRAIIGYCCKQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d29a9ba6adbfde65fe98bb2/pdb.gz): 1035 ms

reading 46 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

46 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 14 ms

Adding embedded #jmolscript: select ({0:45});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sea anemone toxin
source organism	Anemonia sulcata
publication title	Three-dimensional structure of the neurotoxin ATX Ia from Anemonia sulcata in aqueous solution determined by nuclear magnetic resonance spectroscopy. pubmed doi rcsb
molecule keywords	ATX IA
total genus	2
structure length	46
sequence length	46
ec nomenclature
pdb deposition date	1990-05-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00706	Toxin_4	Anenome neurotoxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1atxA00

1Z99A 2K2XA 2JTOA 1ZLHB 1ZUEA 1SH1A 1ZLIB 1WXNA 1SHIA 1B8WA 1AHLA 4GV5A 2RNGA 1H5OA 2SH1A 3LMSB 1APFA 1ZUFA 1WQKA 1ATXA 3D4UB 2H9XA 1BDSA 2MUBA 2MN3A 1D6BA 2BDSA
chains in the Genus database with same CATH superfamily

2IKDA 3C30A 1Z99A 3MYVA 2QSFA 2K2XA 2JTOA 2QSHA 1ZLHB 1ZUEA 1SH1A 4YIRA 3KEZA 1ZLIB 2IKEA 1ZHHB 1GKUB 1WXNA 1SHIA 1B8WA 1AHLA 1GL9B 2QSGA 2DLAA 1EL6A 4GV5A 2RNGA 1H5OA 2SH1A 3LMSB 2B9KA 1APFA 2HJEA 1ZUFA 1WQKA 2XXLA 1ATXA 3D4UB 2HJ9C 2H9XA 1BDSA 3C38A 3IF4A 2JR3A 2MUBA 2MN3A 1D6BA 3MCXA 2BDSA
chains in the Genus database with same CATH topology

2IKDA 3C30A 1Z99A 3MYVA 2QSFA 2K2XA 2JTOA 2QSHA 1ZLHB 1ZUEA 1SH1A 4YIRA 3KEZA 1ZLIB 2IKEA 1ZHHB 1WXNA 1SHIA 1B8WA 1AHLA 2QSGA 2DLAA 4GV5A 2RNGA 1H5OA 2SH1A 3LMSB 2B9KA 1APFA 2HJEA 1ZUFA 1WQKA 2XXLA 1ATXA 3D4UB 2HJ9C 2H9XA 1BDSA 3C38A 2JR3A 2MUBA 2MN3A 1D6BA 3MCXA 2BDSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1Z99 A;  2K2X A;  2JTO A;  1ZLH B;  1ZUE A;  1SH1 A;  1ZLI B;  1WXN A;  1SHI A;  1B8W A;  1AHL A;  4GV5 A;  2RNG A;  1H5O A;  2SH1 A;  3LMS B;  1APF A;  1ZUF A;  1WQK A;  1ATX A;  3D4U B;  2H9X A;  1BDS A;  2MUB A;  2MN3 A;  1D6B A;  2BDS A; 
#chains in the Genus database with same CATH topology
 2IKD A;  3C30 A;  1Z99 A;  3MYV A;  2QSF A;  2K2X A;  2JTO A;  2QSH A;  1ZLH B;  1ZUE A;  1SH1 A;  4YIR A;  3KEZ A;  1ZLI B;  2IKE A;  1ZHH B;  1GKU B;  1WXN A;  1SHI A;  1B8W A;  1AHL A;  1GL9 B;  2QSG A;  2DLA A;  1EL6 A;  4GV5 A;  2RNG A;  1H5O A;  2SH1 A;  3LMS B;  2B9K A;  1APF A;  2HJE A;  1ZUF A;  1WQK A;  2XXL A;  1ATX A;  3D4U B;  2HJ9 C;  2H9X A;  1BDS A;  3C38 A;  3IF4 A;  2JR3 A;  2MUB A;  2MN3 A;  1D6B A;  3MCX A;  2BDS A; 
#chains in the Genus database with same CATH homology
 2IKD A;  3C30 A;  1Z99 A;  3MYV A;  2QSF A;  2K2X A;  2JTO A;  2QSH A;  1ZLH B;  1ZUE A;  1SH1 A;  4YIR A;  3KEZ A;  1ZLI B;  2IKE A;  1ZHH B;  1WXN A;  1SHI A;  1B8W A;  1AHL A;  2QSG A;  2DLA A;  4GV5 A;  2RNG A;  1H5O A;  2SH1 A;  3LMS B;  2B9K A;  1APF A;  2HJE A;  1ZUF A;  1WQK A;  2XXL A;  1ATX A;  3D4U B;  2HJ9 C;  2H9X A;  1BDS A;  3C38 A;  2JR3 A;  2MUB A;  2MN3 A;  1D6B A;  3MCX A;  2BDS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ATXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations