2DLAA

Primase large subunit amino terminal domain from pyrococcus horikoshii
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
222
structure length
222
Chain Sequence
MMIMLDPFSEKAKELLKGFGSINDFMDAIPKIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISIDVSTAIEFPTEDVRKIERVYGKIPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNMLYEIRDELPEFYRKVLGEIQAFAEEEFGRKFGEIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords 397aa long hypothetical protein
publication title Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 78
structure length 222
sequence length 222
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.50 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 2dlaA01
2.20.20.80 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 2dlaA02
2DLAA
chains in the Genus database with same CATH superfamily
2Y1NA 2JBJA 2XPOA 2XEIA 1SH1A 3FF3A 4MCQA 2BDSA 2JBKA 2DLAA 3OB2B 3D4UB 5D29A 3LMSB 4MCRA 4BPUB 1WQKA 3PFVA 3SJGA 3HPGG 1Z99A 5AXIA 3S9LA 3U88C 1WXNA 3D7DA 3BI0A 4NGPA 4OC0A 2SH1A 1EO0A 3S9NA 4NGMA 1ZUEA 4RR2B 3SJFA 2QSGA 3SJXA 1CX8A 1EL6A 2XPNA 3D7GA 1FBVA 3HMJG 4P4BA 3D7HA 3HPHE 1SHIA 1ZLHB 2C6CA 4BPXB 4A4BA 3D7FA 4NGNA 3PLFB 3FECA 2N3AB 2K2XA 3VRPA 4NGSA 2PVVA 4NGRA 4NGTA 1Z9EA 4P4FA 2IKEA 3MCXA 3C30A 3BUMB 2CIJA 3VRNA 3VROA 4A4CA 1D6BA 3BUWB 3BUXB 3O8ZA 1ZUFA 2Y1MA 1DE4C 3IWWA 4JYWA 3C38A 2MN3A 2QSFA 2CBLA 3VGOA 2XPPA 1ATXA 4OC3A 2UV8G 3VRQA 5HKWA 2QSHA 2PVWA 3S9MA 3BI1A 2HJ9C 3MYVA 5HKZA 1Z8LA 1AHLA 2B4JC 3BUNB 3KEZA 3NFQA 1YVHA 4P44A 1B47A 3RBUA 3FEEA 4P4EA 4BTFA 1BDSA 3F9KC 5F13A 2VKZG 4YIRA 4NGQA 2C6GA 4MCPA 1H5OA 3SJEA 3ZNIA 2OR4A 4GV5A 4OC5A 3FEDA 2XEGA 5ELYA 2H9XA 4OC4A 4GPLB 2XPLA 3OB1B 2MUBA 3BHXA 3BXMA 1APFA 2HJEA 3KASA 2XXLA 1WJTA 3PT1A 4P4IA 3IF4A 1B8WA 4OC1A 5BY0A 3VRRA 4P4JA 3BUOB 4MCSA 4X3RA 2JTOA 4OMEA 2XEFA 4BPWB 4LQGA 4P45A 3OP0A 2JR3A 2IKDA 4JZ0A 3OAKA 1ZLIB 2OOTA 4P4DA 5F09A 1GKUB 2RNGA 1ZHHB 2B9KA 2C6PA 4OC2A 5J3XA 1GL9B 4W9YA 5HKYA 2XEJA
chains in the Genus database with same CATH topology
2UV8G 2XXLA 1SH1A 2QSHA 3PT1A 3HMJG 1B8WA 3MYVA 5BY0A 1SHIA 2BDSA 2HJ9C 1ZLHB 2DLAA 1AHLA 4BPXB 3D4UB 3KEZA 2JTOA 3LMSB 1BDSA 5F13A 2VKZG 4BPUB 4BPWB 1WQKA 4YIRA 2K2XA 1H5OA 1Z99A 2JR3A 2IKDA 4GV5A 1WXNA 3MCXA 1ZLIB 2IKEA 3C30A 1D6BA 2RNGA 1ZHHB 2B9KA 2SH1A 1ZUFA 2H9XA 2MUBA 3C38A 1APFA 2MN3A 1ZUEA 2QSFA 4RR2B 1ATXA 2QSGA 2HJEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DLA A; 
#chains in the Genus database with same CATH topology
 2Y1N A;  2JBJ A;  2XPO A;  2XEI A;  1SH1 A;  3FF3 A;  4MCQ A;  2BDS A;  2JBK A;  2DLA A;  3OB2 B;  3D4U B;  5D29 A;  3LMS B;  4MCR A;  4BPU B;  1WQK A;  3PFV A;  3SJG A;  3HPG G;  1Z99 A;  5AXI A;  3S9L A;  3U88 C;  1WXN A;  3D7D A;  3BI0 A;  4NGP A;  4OC0 A;  2SH1 A;  1EO0 A;  3S9N A;  4NGM A;  1ZUE A;  4RR2 B;  3SJF A;  2QSG A;  3SJX A;  1CX8 A;  1EL6 A;  2XPN A;  3D7G A;  1FBV A;  3HMJ G;  4P4B A;  3D7H A;  3HPH E;  1SHI A;  1ZLH B;  2C6C A;  4BPX B;  4A4B A;  3D7F A;  4NGN A;  3PLF B;  3FEC A;  2N3A B;  2K2X A;  3VRP A;  4NGS A;  2PVV A;  4NGR A;  4NGT A;  1Z9E A;  4P4F A;  2IKE A;  3MCX A;  3C30 A;  3BUM B;  2CIJ A;  3VRN A;  3VRO A;  4A4C A;  1D6B A;  3BUW B;  3BUX B;  3O8Z A;  1ZUF A;  2Y1M A;  1DE4 C;  3IWW A;  4JYW A;  3C38 A;  2MN3 A;  2QSF A;  2CBL A;  3VGO A;  2XPP A;  1ATX A;  4OC3 A;  2UV8 G;  3VRQ A;  5HKW A;  2QSH A;  2PVW A;  3S9M A;  3BI1 A;  2HJ9 C;  3MYV A;  5HKZ A;  1Z8L A;  1AHL A;  2B4J C;  3BUN B;  3KEZ A;  3NFQ A;  1YVH A;  4P44 A;  1B47 A;  3RBU A;  3FEE A;  4P4E A;  4BTF A;  1BDS A;  3F9K C;  5F13 A;  2VKZ G;  4YIR A;  4NGQ A;  2C6G A;  4MCP A;  1H5O A;  3SJE A;  3ZNI A;  2OR4 A;  4GV5 A;  4OC5 A;  3FED A;  2XEG A;  5ELY A;  2H9X A;  4OC4 A;  4GPL B;  2XPL A;  3OB1 B;  2MUB A;  3BHX A;  3BXM A;  1APF A;  2HJE A;  3KAS A;  2XXL A;  1WJT A;  3PT1 A;  4P4I A;  3IF4 A;  1B8W A;  4OC1 A;  5BY0 A;  3VRR A;  4P4J A;  3BUO B;  4MCS A;  4X3R A;  2JTO A;  4OME A;  2XEF A;  4BPW B;  4LQG A;  4P45 A;  3OP0 A;  2JR3 A;  2IKD A;  4JZ0 A;  3OAK A;  1ZLI B;  2OOT A;  4P4D A;  5F09 A;  1GKU B;  2RNG A;  1ZHH B;  2B9K A;  2C6P A;  4OC2 A;  5J3X A;  1GL9 B;  4W9Y A;  5HKY A;  2XEJ A; 
#chains in the Genus database with same CATH homology
 2UV8 G;  2XXL A;  1SH1 A;  2QSH A;  3PT1 A;  3HMJ G;  1B8W A;  3MYV A;  5BY0 A;  1SHI A;  2BDS A;  2HJ9 C;  1ZLH B;  2DLA A;  1AHL A;  4BPX B;  3D4U B;  3KEZ A;  2JTO A;  3LMS B;  1BDS A;  5F13 A;  2VKZ G;  4BPU B;  4BPW B;  1WQK A;  4YIR A;  2K2X A;  1H5O A;  1Z99 A;  2JR3 A;  2IKD A;  4GV5 A;  1WXN A;  3MCX A;  1ZLI B;  2IKE A;  3C30 A;  1D6B A;  2RNG A;  1ZHH B;  2B9K A;  2SH1 A;  1ZUF A;  2H9X A;  2MUB A;  3C38 A;  1APF A;  2MN3 A;  1ZUE A;  2QSF A;  4RR2 B;  1ATX A;  2QSG A;  2HJE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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