2DLAA

Primase large subunit amino terminal domain from pyrococcus horikoshii
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
222
structure length
222
Chain Sequence
MMIMLDPFSEKAKELLKGFGSINDFMDAIPKIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISIDVSTAIEFPTEDVRKIERVYGKIPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNMLYEIRDELPEFYRKVLGEIQAFAEEEFGRKFGEIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 397aa long hypothetical protein
publication title Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Replication
total genus 78
structure length 222
sequence length 222
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.50 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 2dlaA01
2.20.20.80 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 2dlaA02
2DLAA
chains in the Genus database with same CATH superfamily
3FF3A 2CIJA 2JTOA 3C38A 3D7DA 3BUNB 4MCQA 2XEGA 3O8ZA 1WJTA 4BPXB 5BY0A 4A4BA 2XEFA 4MCPA 1ZLIB 3KEZA 2DLAA 4P44A 3MCXA 3OB2B 3KASA 1Z99A 3BXMA 4LQGA 2CBLA 2XPPA 3OB1B 2QSFA 4X3RA 3VRRA 1WQKA 3PT1A 3HMJG 5F13A 1ZLHB 1APFA 3VRQA 2IKEA 3VRNA 2OOTA 3HPGG 1ZUFA 1DE4C 2C6GA 3SJFA 3RBUA 3D7FA 5HKYA 1EL6A 2RNGA 4P4DA 2C6CA 2B9KA 2QSGA 2QSHA 2XEJA 2IKDA 2HJEA 2HJ9C 4P4IA 1EO0A 2XXLA 5F09A 4JYWA 3BUMB 3F9KC 4OC5A 4BPWB 2SH1A 4NGMA 1B47A 2XPOA 3BUXB 3OAKA 1D6BA 2BDSA 1SH1A 3BHXA 5ELYA 4NGNA 2JBJA 1WXNA 3LMSB 4NGPA 2MN3A 4NGQA 4BPUB 4OC2A 3SJXA 3ZNIA 2OR4A 2H9XA 1B8WA 1GL9B 2PVWA 3PLFB 4P4FA 2K2XA 2Y1NA 3D7GA 4MCSA 4OMEA 3FEEA 5J3XA 2XPLA 3HPHE 3D4UB 4A4CA 4BTFA 4OC4A 3BI0A 3FEDA 3IF4A 1GKUB 2UV8G 4NGRA 1BDSA 1Z9EA 4OC3A 4NGTA 4P4JA 4P4BA 1FBVA 2Y1MA 4GV5A 2XPNA 4OC0A 2VKZG 3S9LA 3NFQA 3BUOB 3MYVA 3FECA 2B4JC 3VRPA 2MUBA 4JZ0A 2N3AB 5HKWA 3D7HA 3IWWA 2C6PA 5AXIA 3C30A 3BUWB 4OC1A 1ATXA 4MCRA 3VROA 3S9MA 3SJGA 2PVVA 3PFVA 3VGOA 1YVHA 2XEIA 2JBKA 4YIRA 4RR2B 1ZUEA 3SJEA 1H5OA 5D29A 4W9YA 4P45A 5HKZA 1CX8A 3BI1A 1Z8LA 3U88C 2JR3A 4GPLB 4NGSA 1SHIA 4P4EA 3OP0A 1AHLA 1ZHHB 3S9NA
chains in the Genus database with same CATH topology
2H9XA 2MUBA 2IKEA 2JTOA 3C38A 1B8WA 2K2XA 1APFA 1ZUFA 4BPXB 5BY0A 2RNGA 2QSGA 3C30A 2B9KA 2QSHA 1ATXA 1ZLIB 3KEZA 2DLAA 2IKDA 2HJEA 2HJ9C 3MCXA 3D4UB 4YIRA 4RR2B 1Z99A 1ZUEA 2XXLA 1H5OA 4BPWB 2UV8G 2SH1A 1BDSA 2JR3A 2QSFA 1D6BA 2BDSA 1SH1A 1SHIA 1WQKA 3PT1A 3HMJG 1WXNA 3LMSB 2VKZG 4BPUB 2MN3A 4GV5A 3MYVA 1AHLA 5F13A 1ZLHB 1ZHHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DLA A; 
#chains in the Genus database with same CATH topology
 3FF3 A;  2CIJ A;  2JTO A;  3C38 A;  3D7D A;  3BUN B;  4MCQ A;  2XEG A;  3O8Z A;  1WJT A;  4BPX B;  5BY0 A;  4A4B A;  2XEF A;  4MCP A;  1ZLI B;  3KEZ A;  2DLA A;  4P44 A;  3MCX A;  3OB2 B;  3KAS A;  1Z99 A;  3BXM A;  4LQG A;  2CBL A;  2XPP A;  3OB1 B;  2QSF A;  4X3R A;  3VRR A;  1WQK A;  3PT1 A;  3HMJ G;  5F13 A;  1ZLH B;  1APF A;  3VRQ A;  2IKE A;  3VRN A;  2OOT A;  3HPG G;  1ZUF A;  1DE4 C;  2C6G A;  3SJF A;  3RBU A;  3D7F A;  5HKY A;  1EL6 A;  2RNG A;  4P4D A;  2C6C A;  2B9K A;  2QSG A;  2QSH A;  2XEJ A;  2IKD A;  2HJE A;  2HJ9 C;  4P4I A;  1EO0 A;  2XXL A;  5F09 A;  4JYW A;  3BUM B;  3F9K C;  4OC5 A;  4BPW B;  2SH1 A;  4NGM A;  1B47 A;  2XPO A;  3BUX B;  3OAK A;  1D6B A;  2BDS A;  1SH1 A;  3BHX A;  5ELY A;  4NGN A;  2JBJ A;  1WXN A;  3LMS B;  4NGP A;  2MN3 A;  4NGQ A;  4BPU B;  4OC2 A;  3SJX A;  3ZNI A;  2OR4 A;  2H9X A;  1B8W A;  1GL9 B;  2PVW A;  3PLF B;  4P4F A;  2K2X A;  2Y1N A;  3D7G A;  4MCS A;  4OME A;  3FEE A;  5J3X A;  2XPL A;  3HPH E;  3D4U B;  4A4C A;  4BTF A;  4OC4 A;  3BI0 A;  3FED A;  3IF4 A;  1GKU B;  2UV8 G;  4NGR A;  1BDS A;  1Z9E A;  4OC3 A;  4NGT A;  4P4J A;  4P4B A;  1FBV A;  2Y1M A;  4GV5 A;  2XPN A;  4OC0 A;  2VKZ G;  3S9L A;  3NFQ A;  3BUO B;  3MYV A;  3FEC A;  2B4J C;  3VRP A;  2MUB A;  4JZ0 A;  2N3A B;  5HKW A;  3D7H A;  3IWW A;  2C6P A;  5AXI A;  3C30 A;  3BUW B;  4OC1 A;  1ATX A;  4MCR A;  3VRO A;  3S9M A;  3SJG A;  2PVV A;  3PFV A;  3VGO A;  1YVH A;  2XEI A;  2JBK A;  4YIR A;  4RR2 B;  1ZUE A;  3SJE A;  1H5O A;  5D29 A;  4W9Y A;  4P45 A;  5HKZ A;  1CX8 A;  3BI1 A;  1Z8L A;  3U88 C;  2JR3 A;  4GPL B;  4NGS A;  1SHI A;  4P4E A;  3OP0 A;  1AHL A;  1ZHH B;  3S9N A; 
#chains in the Genus database with same CATH homology
 2H9X A;  2MUB A;  2IKE A;  2JTO A;  3C38 A;  1B8W A;  2K2X A;  1APF A;  1ZUF A;  4BPX B;  5BY0 A;  2RNG A;  2QSG A;  3C30 A;  2B9K A;  2QSH A;  1ATX A;  1ZLI B;  3KEZ A;  2DLA A;  2IKD A;  2HJE A;  2HJ9 C;  3MCX A;  3D4U B;  4YIR A;  4RR2 B;  1Z99 A;  1ZUE A;  2XXL A;  1H5O A;  4BPW B;  2UV8 G;  2SH1 A;  1BDS A;  2JR3 A;  2QSF A;  1D6B A;  2BDS A;  1SH1 A;  1SHI A;  1WQK A;  3PT1 A;  3HMJ G;  1WXN A;  3LMS B;  2VKZ G;  4BPU B;  2MN3 A;  4GV5 A;  3MYV A;  1AHL A;  5F13 A;  1ZLH B;  1ZHH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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