2DLAA

Primase large subunit amino terminal domain from pyrococcus horikoshii
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
222
structure length
222
Chain Sequence
MMIMLDPFSEKAKELLKGFGSINDFMDAIPKIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISIDVSTAIEFPTEDVRKIERVYGKIPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNMLYEIRDELPEFYRKVLGEIQAFAEEEFGRKFGEIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Replication
molecule keywords 397aa long hypothetical protein
total genus 78
structure length 222
sequence length 222
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.50 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 2dlaA01
2.20.20.80 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 2dlaA02
2DLAA
chains in the Genus database with same CATH superfamily
3U88C 2DLAA 1ZLIB 1Z8LA 3FECA 5AXIA 4NGMA 1AHLA 3BI0A 3BUMB 3SJXA 4OC4A 4BPUB 1EO0A 2PVVA 2CIJA 4OC2A 2XXLA 2OOTA 5BY0A 1B47A 3OB1B 3BHXA 3S9NA 3BUOB 3HMJG 3VRQA 2XPLA 1D6BA 1DE4C 2C6GA 4OMEA 1FBVA 3C38A 5HKWA 4BPXB 2Y1NA 5HKZA 1Z99A 4A4BA 4OC1A 3OAKA 2JTOA 3VRRA 2N3AB 4LQGA 3C30A 4NGSA 3ZNIA 4NGNA 1B8WA 3D7HA 4P4DA 2HJ9C 2XPOA 3IF4A 1ATXA 3LMSB 1ZLHB 2QSFA 3FEEA 3S9MA 4NGQA 2VKZG 2JBJA 3NFQA 4OC0A 2K2XA 3BUWB 4NGTA 5J3XA 1CX8A 3PT1A 2BDSA 5F09A 3D7GA 4P4BA 4X3RA 1WJTA 1BDSA 3BUNB 2C6PA 4MCPA 3MYVA 4P44A 3HPGG 4RR2B 4P4EA 5F13A 3S9LA 2QSGA 4MCRA 4JZ0A 1H5OA 3HPHE 2B9KA 1WXNA 3FEDA 2Y1MA 1EL6A 2HJEA 3FF3A 3VGOA 3VRPA 4A4CA 2JR3A 2XEJA 3VROA 1APFA 3VRNA 3BXMA 2MUBA 4GV5A 1GL9B 2B4JC 3PFVA 4JYWA 3SJEA 3F9KC 4NGPA 1SHIA 2RNGA 4BPWB 4GPLB 4P45A 3BI1A 4NGRA 2IKDA 2PVWA 1SH1A 2OR4A 3D7FA 4P4FA 4P4IA 5D29A 2XPPA 1YVHA 2XEGA 1ZUEA 2IKEA 3SJFA 4P4JA 2XEIA 3OP0A 3IWWA 3KASA 2H9XA 5HKYA 2C6CA 2UV8G 3OB2B 2SH1A 1ZUFA 4BTFA 4YIRA 3PLFB 3D7DA 2CBLA 1WQKA 1Z9EA 1ZHHB 3BUXB 4W9YA 3RBUA 3O8ZA 2XEFA 1GKUB 3SJGA 4MCQA 4OC3A 2JBKA 2MN3A 3MCXA 3D4UB 5ELYA 3KEZA 2XPNA 4MCSA 4OC5A 2QSHA
chains in the Genus database with same CATH topology
2IKDA 2DLAA 1ZLIB 1SH1A 2JTOA 3MYVA 3C30A 1AHLA 4RR2B 5F13A 2QSGA 1ZUEA 2IKEA 1B8WA 1H5OA 2HJ9C 4BPUB 2B9KA 1WXNA 1ATXA 3LMSB 2H9XA 1ZLHB 2XXLA 2QSFA 2UV8G 5BY0A 2SH1A 1ZUFA 4YIRA 2HJEA 2VKZG 1WQKA 2JR3A 1ZHHB 3HMJG 1APFA 1D6BA 2K2XA 3PT1A 3C38A 2MUBA 4BPXB 4GV5A 2BDSA 2MN3A 3MCXA 3D4UB 3KEZA 1Z99A 2RNGA 1SHIA 1BDSA 4BPWB 2QSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DLA A; 
#chains in the Genus database with same CATH topology
 3U88 C;  2DLA A;  1ZLI B;  1Z8L A;  3FEC A;  5AXI A;  4NGM A;  1AHL A;  3BI0 A;  3BUM B;  3SJX A;  4OC4 A;  4BPU B;  1EO0 A;  2PVV A;  2CIJ A;  4OC2 A;  2XXL A;  2OOT A;  5BY0 A;  1B47 A;  3OB1 B;  3BHX A;  3S9N A;  3BUO B;  3HMJ G;  3VRQ A;  2XPL A;  1D6B A;  1DE4 C;  2C6G A;  4OME A;  1FBV A;  3C38 A;  5HKW A;  4BPX B;  2Y1N A;  5HKZ A;  1Z99 A;  4A4B A;  4OC1 A;  3OAK A;  2JTO A;  3VRR A;  2N3A B;  4LQG A;  3C30 A;  4NGS A;  3ZNI A;  4NGN A;  1B8W A;  3D7H A;  4P4D A;  2HJ9 C;  2XPO A;  3IF4 A;  1ATX A;  3LMS B;  1ZLH B;  2QSF A;  3FEE A;  3S9M A;  4NGQ A;  2VKZ G;  2JBJ A;  3NFQ A;  4OC0 A;  2K2X A;  3BUW B;  4NGT A;  5J3X A;  1CX8 A;  3PT1 A;  2BDS A;  5F09 A;  3D7G A;  4P4B A;  4X3R A;  1WJT A;  1BDS A;  3BUN B;  2C6P A;  4MCP A;  3MYV A;  4P44 A;  3HPG G;  4RR2 B;  4P4E A;  5F13 A;  3S9L A;  2QSG A;  4MCR A;  4JZ0 A;  1H5O A;  3HPH E;  2B9K A;  1WXN A;  3FED A;  2Y1M A;  1EL6 A;  2HJE A;  3FF3 A;  3VGO A;  3VRP A;  4A4C A;  2JR3 A;  2XEJ A;  3VRO A;  1APF A;  3VRN A;  3BXM A;  2MUB A;  4GV5 A;  1GL9 B;  2B4J C;  3PFV A;  4JYW A;  3SJE A;  3F9K C;  4NGP A;  1SHI A;  2RNG A;  4BPW B;  4GPL B;  4P45 A;  3BI1 A;  4NGR A;  2IKD A;  2PVW A;  1SH1 A;  2OR4 A;  3D7F A;  4P4F A;  4P4I A;  5D29 A;  2XPP A;  1YVH A;  2XEG A;  1ZUE A;  2IKE A;  3SJF A;  4P4J A;  2XEI A;  3OP0 A;  3IWW A;  3KAS A;  2H9X A;  5HKY A;  2C6C A;  2UV8 G;  3OB2 B;  2SH1 A;  1ZUF A;  4BTF A;  4YIR A;  3PLF B;  3D7D A;  2CBL A;  1WQK A;  1Z9E A;  1ZHH B;  3BUX B;  4W9Y A;  3RBU A;  3O8Z A;  2XEF A;  1GKU B;  3SJG A;  4MCQ A;  4OC3 A;  2JBK A;  2MN3 A;  3MCX A;  3D4U B;  5ELY A;  3KEZ A;  2XPN A;  4MCS A;  4OC5 A;  2QSH A; 
#chains in the Genus database with same CATH homology
 2IKD A;  2DLA A;  1ZLI B;  1SH1 A;  2JTO A;  3MYV A;  3C30 A;  1AHL A;  4RR2 B;  5F13 A;  2QSG A;  1ZUE A;  2IKE A;  1B8W A;  1H5O A;  2HJ9 C;  4BPU B;  2B9K A;  1WXN A;  1ATX A;  3LMS B;  2H9X A;  1ZLH B;  2XXL A;  2QSF A;  2UV8 G;  5BY0 A;  2SH1 A;  1ZUF A;  4YIR A;  2HJE A;  2VKZ G;  1WQK A;  2JR3 A;  1ZHH B;  3HMJ G;  1APF A;  1D6B A;  2K2X A;  3PT1 A;  3C38 A;  2MUB A;  4BPX B;  4GV5 A;  2BDS A;  2MN3 A;  3MCX A;  3D4U B;  3KEZ A;  1Z99 A;  2RNG A;  1SHI A;  1BDS A;  4BPW B;  2QSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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