2DLAA

Primase large subunit amino terminal domain from pyrococcus horikoshii
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
222
structure length
222
Chain Sequence
b'MMIMLDPFSEKAKELLKGFGSINDFMDAIPKIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISIDVSTAIEFPTEDVRKIERVYGKIPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNMLYEIRDELPEFYRKVLGEIQAFAEEEFGRKFGEIQ'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 397aa long hypothetical protein
publication title Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Replication
total genus 78
structure length 222
sequence length 222
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-04-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.50 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 2dlaA01
2.20.20.80 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 2dlaA02
2DLAA
chains in the Genus database with same CATH superfamily
2XPOA 2OR4A 3BI1A 1ZUFA 3VRNA 3SJXA 4P44A 2Y1NA 1AHLA 3BI0A 3LMSB 3IWWA 3VGOA 2K2XA 3BUOB 5AXIA 1DE4C 3OB2B 3PT1A 5HKWA 2PVWA 1Z8LA 1B8WA 2CIJA 3S9LA 2SH1A 4P45A 2JBKA 4MCRA 4NGSA 4OC1A 2JTOA 3VRQA 2C6GA 1YVHA 3MCXA 1ATXA 3MYVA 2XEGA 4P4DA 1WJTA 3BUMB 3D7GA 1GL9B 4BPWB 2QSGA 2XEIA 5HKZA 2PVVA 4OC5A 3SJGA 5BY0A 3VROA 2QSHA 2JR3A 1APFA 4JZ0A 3D7HA 3O8ZA 2UV8G 4LQGA 4P4IA 5F09A 2DLAA 3HMJG 2RNGA 2HJ9C 3PFVA 4A4BA 2Y1MA 1EO0A 3D7FA 4BTFA 3D7DA 5HKYA 3D4UB 5ELYA 2XPPA 4RR2B 4W9YA 4NGRA 2IKDA 1H5OA 3BHXA 4BPXB 3FEDA 3F9KC 4GPLB 3OAKA 3VRRA 4GV5A 3S9MA 2B4JC 3SJFA 3SJEA 4OC4A 2IKEA 3HPHE 5F13A 3RBUA 2JBJA 1ZHHB 1ZLIB 3KEZA 4MCPA 1SHIA 4OC3A 3BUWB 1D6BA 4OC2A 2B9KA 4OC0A 2H9XA 4NGPA 3VRPA 1B47A 1ZUEA 2BDSA 2N3AB 1WQKA 1GKUB 5D29A 2XEFA 3KASA 3IF4A 3C38A 2XPLA 4X3RA 4BPUB 3ZNIA 2MN3A 3BUNB 3PLFB 4P4BA 2VKZG 1CX8A 2OOTA 1ZLHB 4NGTA 4MCSA 3BXMA 3FF3A 3FEEA 3NFQA 3OB1B 4MCQA 1EL6A 4A4CA 4YIRA 2MUBA 2QSFA 4OMEA 3BUXB 1Z99A 4NGQA 4NGMA 2C6PA 1WXNA 3S9NA 4JYWA 1Z9EA 2HJEA 3FECA 1BDSA 1SH1A 4P4FA 2CBLA 3U88C 4P4JA 4NGNA 2XXLA 3HPGG 5J3XA 2XPNA 3OP0A 3C30A 2C6CA 2XEJA 1FBVA 4P4EA
chains in the Genus database with same CATH topology
3MYVA 1H5OA 2MN3A 1ZUFA 4BPXB 4GV5A 4BPWB 2QSGA 2VKZG 1AHLA 1ZLHB 3LMSB 1Z99A 2K2XA 4YIRA 2IKEA 3PT1A 5F13A 5BY0A 1ZLIB 1ZHHB 2MUBA 2QSFA 3KEZA 2QSHA 1SHIA 2JR3A 1APFA 2UV8G 3HMJG 1D6BA 2DLAA 2RNGA 1WXNA 2B9KA 2HJ9C 2H9XA 2HJEA 1B8WA 1ZUEA 1BDSA 1SH1A 2BDSA 2SH1A 1WQKA 3D4UB 2JTOA 2XXLA 4RR2B 3C30A 3C38A 3MCXA 2IKDA 4BPUB 1ATXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DLA A; 
#chains in the Genus database with same CATH topology
 2XPO A;  2OR4 A;  3BI1 A;  1ZUF A;  3VRN A;  3SJX A;  4P44 A;  2Y1N A;  1AHL A;  3BI0 A;  3LMS B;  3IWW A;  3VGO A;  2K2X A;  3BUO B;  5AXI A;  1DE4 C;  3OB2 B;  3PT1 A;  5HKW A;  2PVW A;  1Z8L A;  1B8W A;  2CIJ A;  3S9L A;  2SH1 A;  4P45 A;  2JBK A;  4MCR A;  4NGS A;  4OC1 A;  2JTO A;  3VRQ A;  2C6G A;  1YVH A;  3MCX A;  1ATX A;  3MYV A;  2XEG A;  4P4D A;  1WJT A;  3BUM B;  3D7G A;  1GL9 B;  4BPW B;  2QSG A;  2XEI A;  5HKZ A;  2PVV A;  4OC5 A;  3SJG A;  5BY0 A;  3VRO A;  2QSH A;  2JR3 A;  1APF A;  4JZ0 A;  3D7H A;  3O8Z A;  2UV8 G;  4LQG A;  4P4I A;  5F09 A;  2DLA A;  3HMJ G;  2RNG A;  2HJ9 C;  3PFV A;  4A4B A;  2Y1M A;  1EO0 A;  3D7F A;  4BTF A;  3D7D A;  5HKY A;  3D4U B;  5ELY A;  2XPP A;  4RR2 B;  4W9Y A;  4NGR A;  2IKD A;  1H5O A;  3BHX A;  4BPX B;  3FED A;  3F9K C;  4GPL B;  3OAK A;  3VRR A;  4GV5 A;  3S9M A;  2B4J C;  3SJF A;  3SJE A;  4OC4 A;  2IKE A;  3HPH E;  5F13 A;  3RBU A;  2JBJ A;  1ZHH B;  1ZLI B;  3KEZ A;  4MCP A;  1SHI A;  4OC3 A;  3BUW B;  1D6B A;  4OC2 A;  2B9K A;  4OC0 A;  2H9X A;  4NGP A;  3VRP A;  1B47 A;  1ZUE A;  2BDS A;  2N3A B;  1WQK A;  1GKU B;  5D29 A;  2XEF A;  3KAS A;  3IF4 A;  3C38 A;  2XPL A;  4X3R A;  4BPU B;  3ZNI A;  2MN3 A;  3BUN B;  3PLF B;  4P4B A;  2VKZ G;  1CX8 A;  2OOT A;  1ZLH B;  4NGT A;  4MCS A;  3BXM A;  3FF3 A;  3FEE A;  3NFQ A;  3OB1 B;  4MCQ A;  1EL6 A;  4A4C A;  4YIR A;  2MUB A;  2QSF A;  4OME A;  3BUX B;  1Z99 A;  4NGQ A;  4NGM A;  2C6P A;  1WXN A;  3S9N A;  4JYW A;  1Z9E A;  2HJE A;  3FEC A;  1BDS A;  1SH1 A;  4P4F A;  2CBL A;  3U88 C;  4P4J A;  4NGN A;  2XXL A;  3HPG G;  5J3X A;  2XPN A;  3OP0 A;  3C30 A;  2C6C A;  2XEJ A;  1FBV A;  4P4E A; 
#chains in the Genus database with same CATH homology
 3MYV A;  1H5O A;  2MN3 A;  1ZUF A;  4BPX B;  4GV5 A;  4BPW B;  2QSG A;  2VKZ G;  1AHL A;  1ZLH B;  3LMS B;  1Z99 A;  2K2X A;  4YIR A;  2IKE A;  3PT1 A;  5F13 A;  5BY0 A;  1ZLI B;  1ZHH B;  2MUB A;  2QSF A;  3KEZ A;  2QSH A;  1SHI A;  2JR3 A;  1APF A;  2UV8 G;  3HMJ G;  1D6B A;  2DLA A;  2RNG A;  1WXN A;  2B9K A;  2HJ9 C;  2H9X A;  2HJE A;  1B8W A;  1ZUE A;  1BDS A;  1SH1 A;  2BDS A;  2SH1 A;  1WQK A;  3D4U B;  2JTO A;  2XXL A;  4RR2 B;  3C30 A;  3C38 A;  3MCX A;  2IKD A;  4BPU B;  1ATX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...