1B8W | Genus

Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	6
sequence length	42
structure length	42
Chain Sequence	FVQHRPRDCESINGVCRHKDTVNCREIFLADCYNDGQKCCRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 42 atoms

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42 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
publication title	Solution structure of a defensin-like peptide from platypus venom. pubmed doi rcsb
molecule keywords	PROTEIN (DEFENSIN-LIKE PEPTIDE 1)
total genus	6
structure length	42
sequence length	42
ec nomenclature
pdb deposition date	1999-02-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08131	Defensin_3	Defensin-like peptide family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1b8wA00

1ZLHB 3LMSB 2JTOA 1SHIA 2H9XA 1BDSA 1ATXA 1APFA 1B8WA 1ZLIB 2RNGA 1ZUEA 2K2XA 1AHLA 1WQKA 1ZUFA 2SH1A 2BDSA 2MN3A 1SH1A 4GV5A 3D4UB 1D6BA 1WXNA 2MUBA 1Z99A 1H5OA
chains in the Genus database with same CATH superfamily

1ZLHB 3LMSB 2B9KA 1GKUB 2JTOA 1SHIA 2H9XA 1BDSA 2IKEA 2QSHA 1ATXA 2JR3A 1APFA 1EL6A 2QSFA 2HJEA 2XXLA 1B8WA 1ZLIB 2RNGA 1ZUEA 2K2XA 1AHLA 3IF4A 1WQKA 3C30A 1ZUFA 2SH1A 2BDSA 1ZHHB 3MCXA 4YIRA 2QSGA 3C38A 1GL9B 2HJ9C 2IKDA 2MN3A 3KEZA 1SH1A 4GV5A 3D4UB 1D6BA 1WXNA 3MYVA 2MUBA 1Z99A 2DLAA 1H5OA
chains in the Genus database with same CATH topology

1ZLHB 3LMSB 2B9KA 2JTOA 1SHIA 2H9XA 1BDSA 2IKEA 2QSHA 1ATXA 2JR3A 1APFA 2QSFA 2HJEA 2XXLA 1B8WA 1ZLIB 2RNGA 1ZUEA 2K2XA 1AHLA 1WQKA 3C30A 1ZUFA 2SH1A 2BDSA 1ZHHB 3MCXA 4YIRA 2QSGA 3C38A 2HJ9C 2IKDA 2MN3A 3KEZA 1SH1A 4GV5A 3D4UB 1D6BA 1WXNA 3MYVA 2MUBA 1Z99A 2DLAA 1H5OA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1ZLH B;  3LMS B;  2JTO A;  1SHI A;  2H9X A;  1BDS A;  1ATX A;  1APF A;  1B8W A;  1ZLI B;  2RNG A;  1ZUE A;  2K2X A;  1AHL A;  1WQK A;  1ZUF A;  2SH1 A;  2BDS A;  2MN3 A;  1SH1 A;  4GV5 A;  3D4U B;  1D6B A;  1WXN A;  2MUB A;  1Z99 A;  1H5O A; 
#chains in the Genus database with same CATH topology
 1ZLH B;  3LMS B;  2B9K A;  1GKU B;  2JTO A;  1SHI A;  2H9X A;  1BDS A;  2IKE A;  2QSH A;  1ATX A;  2JR3 A;  1APF A;  1EL6 A;  2QSF A;  2HJE A;  2XXL A;  1B8W A;  1ZLI B;  2RNG A;  1ZUE A;  2K2X A;  1AHL A;  3IF4 A;  1WQK A;  3C30 A;  1ZUF A;  2SH1 A;  2BDS A;  1ZHH B;  3MCX A;  4YIR A;  2QSG A;  3C38 A;  1GL9 B;  2HJ9 C;  2IKD A;  2MN3 A;  3KEZ A;  1SH1 A;  4GV5 A;  3D4U B;  1D6B A;  1WXN A;  3MYV A;  2MUB A;  1Z99 A;  2DLA A;  1H5O A; 
#chains in the Genus database with same CATH homology
 1ZLH B;  3LMS B;  2B9K A;  2JTO A;  1SHI A;  2H9X A;  1BDS A;  2IKE A;  2QSH A;  1ATX A;  2JR3 A;  1APF A;  2QSF A;  2HJE A;  2XXL A;  1B8W A;  1ZLI B;  2RNG A;  1ZUE A;  2K2X A;  1AHL A;  1WQK A;  3C30 A;  1ZUF A;  2SH1 A;  2BDS A;  1ZHH B;  3MCX A;  4YIR A;  2QSG A;  3C38 A;  2HJ9 C;  2IKD A;  2MN3 A;  3KEZ A;  1SH1 A;  4GV5 A;  3D4U B;  1D6B A;  1WXN A;  3MYV A;  2MUB A;  1Z99 A;  2DLA A;  1H5O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1B8WA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations