1BDSA

Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein bds-i from the sea anemone anemonia sulcata. a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
43
structure length
43
Chain Sequence
AAPCFCSGKPGRGDLWILRGTCPGGYGYTSNCYKWPNICCYPH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein BDS-I from the sea anemone Anemonia sulcata: a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing.
pubmed doi rcsb
molecule tags Anti-hypertensive, anti-viral protein
source organism Anemonia sulcata
molecule keywords BDS-I
total genus 4
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 1988-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07936 Defensin_4 Potassium-channel blocking toxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 1bdsA00
3LMSB 2MN3A 1ATXA 1SHIA 3D4UB 1APFA 2BDSA 1ZLIB 1SH1A 1D6BA 1AHLA 1H5OA 1ZUFA 2MUBA 2RNGA 1Z99A 1WXNA 2SH1A 2K2XA 1B8WA 2JTOA 1ZLHB 4GV5A 1WQKA 1ZUEA 2H9XA 1BDSA
chains in the Genus database with same CATH superfamily
3LMSB 2MN3A 1ATXA 1SHIA 3C38A 2QSGA 3D4UB 1APFA 2BDSA 1ZLIB 1SH1A 2IKDA 1D6BA 2HJ9C 1GKUB 1AHLA 1H5OA 2B9KA 1ZUFA 2IKEA 2MUBA 2RNGA 2QSHA 1EL6A 1Z99A 1WXNA 2K2XA 2SH1A 2QSFA 3KEZA 2HJEA 1B8WA 1GL9B 2JTOA 2DLAA 3C30A 1ZLHB 3IF4A 3MYVA 4GV5A 2JR3A 1ZHHB 3MCXA 4YIRA 2XXLA 1WQKA 1ZUEA 2H9XA 1BDSA
chains in the Genus database with same CATH topology
3LMSB 2MN3A 1ATXA 1SHIA 3C38A 2QSGA 3D4UB 1APFA 2BDSA 1ZLIB 1SH1A 2IKDA 1D6BA 2HJ9C 1AHLA 1H5OA 2B9KA 1ZUFA 2IKEA 2MUBA 2RNGA 2QSHA 1Z99A 1WXNA 2K2XA 2SH1A 2QSFA 3KEZA 2HJEA 1B8WA 2JTOA 2DLAA 3C30A 1ZLHB 3MYVA 4GV5A 2JR3A 1ZHHB 3MCXA 4YIRA 2XXLA 1WQKA 1ZUEA 2H9XA 1BDSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMS B;  2MN3 A;  1ATX A;  1SHI A;  3D4U B;  1APF A;  2BDS A;  1ZLI B;  1SH1 A;  1D6B A;  1AHL A;  1H5O A;  1ZUF A;  2MUB A;  2RNG A;  1Z99 A;  1WXN A;  2SH1 A;  2K2X A;  1B8W A;  2JTO A;  1ZLH B;  4GV5 A;  1WQK A;  1ZUE A;  2H9X A;  1BDS A; 
#chains in the Genus database with same CATH topology
 3LMS B;  2MN3 A;  1ATX A;  1SHI A;  3C38 A;  2QSG A;  3D4U B;  1APF A;  2BDS A;  1ZLI B;  1SH1 A;  2IKD A;  1D6B A;  2HJ9 C;  1GKU B;  1AHL A;  1H5O A;  2B9K A;  1ZUF A;  2IKE A;  2MUB A;  2RNG A;  2QSH A;  1EL6 A;  1Z99 A;  1WXN A;  2K2X A;  2SH1 A;  2QSF A;  3KEZ A;  2HJE A;  1B8W A;  1GL9 B;  2JTO A;  2DLA A;  3C30 A;  1ZLH B;  3IF4 A;  3MYV A;  4GV5 A;  2JR3 A;  1ZHH B;  3MCX A;  4YIR A;  2XXL A;  1WQK A;  1ZUE A;  2H9X A;  1BDS A; 
#chains in the Genus database with same CATH homology
 3LMS B;  2MN3 A;  1ATX A;  1SHI A;  3C38 A;  2QSG A;  3D4U B;  1APF A;  2BDS A;  1ZLI B;  1SH1 A;  2IKD A;  1D6B A;  2HJ9 C;  1AHL A;  1H5O A;  2B9K A;  1ZUF A;  2IKE A;  2MUB A;  2RNG A;  2QSH A;  1Z99 A;  1WXN A;  2K2X A;  2SH1 A;  2QSF A;  3KEZ A;  2HJE A;  1B8W A;  2JTO A;  2DLA A;  3C30 A;  1ZLH B;  3MYV A;  4GV5 A;  2JR3 A;  1ZHH B;  3MCX A;  4YIR A;  2XXL A;  1WQK A;  1ZUE A;  2H9X A;  1BDS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...