1H5O | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	42
structure length	42
Chain Sequence	YKQCHKKGGHCFPKEKICLPPSSDFGKMDCRWRWKCCKKGSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d29ac65e0498bc1a29f3ae9/pdb.gz): 1081 ms

reading 42 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

42 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 14 ms

Adding embedded #jmolscript: select ({0:41});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
publication title	Solution Structure of Crotamine, a Na+ Channel Affecting Toxin from Crotalus Durissus Terrificus Venom pubmed doi rcsb
molecule keywords	MYOTOXIN
total genus	7
structure length	42
sequence length	42
ec nomenclature
pdb deposition date	2001-05-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1h5oA00

1SHIA 1H5OA 3LMSB 2JTOA 2RNGA 1B8WA 2SH1A 1ZUEA 1ATXA 3D4UB 2K2XA 1SH1A 1ZLIB 1Z99A 2H9XA 1BDSA 1ZLHB 4GV5A 1APFA 2MN3A 2BDSA 1D6BA 1WQKA 1WXNA 1ZUFA 2MUBA 1AHLA
chains in the Genus database with same CATH superfamily

1SHIA 2JR3A 2B9KA 2IKDA 1H5OA 2HJEA 2JTOA 3LMSB 2RNGA 1B8WA 2SH1A 1ZUEA 1ATXA 3D4UB 2K2XA 2QSGA 1SH1A 1ZLIB 1GKUB 1Z99A 2IKEA 2H9XA 4YIRA 1BDSA 1ZLHB 1ZHHB 3C38A 4GV5A 1APFA 2QSHA 2DLAA 2MN3A 3KEZA 3MYVA 3MCXA 2BDSA 1D6BA 1WQKA 3IF4A 1GL9B 3C30A 2HJ9C 1WXNA 1ZUFA 2MUBA 2XXLA 1EL6A 2QSFA 1AHLA
chains in the Genus database with same CATH topology

1SHIA 2JR3A 2B9KA 2IKDA 1H5OA 2HJEA 2JTOA 3LMSB 2RNGA 1B8WA 2SH1A 1ZUEA 1ATXA 3D4UB 2K2XA 2QSGA 1SH1A 1ZLIB 1Z99A 2IKEA 2H9XA 4YIRA 1BDSA 1ZLHB 1ZHHB 3C38A 4GV5A 1APFA 2QSHA 2DLAA 2MN3A 3KEZA 3MYVA 3MCXA 2BDSA 1D6BA 1WQKA 3C30A 2HJ9C 1WXNA 1ZUFA 2MUBA 2XXLA 2QSFA 1AHLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1SHI A;  1H5O A;  3LMS B;  2JTO A;  2RNG A;  1B8W A;  2SH1 A;  1ZUE A;  1ATX A;  3D4U B;  2K2X A;  1SH1 A;  1ZLI B;  1Z99 A;  2H9X A;  1BDS A;  1ZLH B;  4GV5 A;  1APF A;  2MN3 A;  2BDS A;  1D6B A;  1WQK A;  1WXN A;  1ZUF A;  2MUB A;  1AHL A; 
#chains in the Genus database with same CATH topology
 1SHI A;  2JR3 A;  2B9K A;  2IKD A;  1H5O A;  2HJE A;  2JTO A;  3LMS B;  2RNG A;  1B8W A;  2SH1 A;  1ZUE A;  1ATX A;  3D4U B;  2K2X A;  2QSG A;  1SH1 A;  1ZLI B;  1GKU B;  1Z99 A;  2IKE A;  2H9X A;  4YIR A;  1BDS A;  1ZLH B;  1ZHH B;  3C38 A;  4GV5 A;  1APF A;  2QSH A;  2DLA A;  2MN3 A;  3KEZ A;  3MYV A;  3MCX A;  2BDS A;  1D6B A;  1WQK A;  3IF4 A;  1GL9 B;  3C30 A;  2HJ9 C;  1WXN A;  1ZUF A;  2MUB A;  2XXL A;  1EL6 A;  2QSF A;  1AHL A; 
#chains in the Genus database with same CATH homology
 1SHI A;  2JR3 A;  2B9K A;  2IKD A;  1H5O A;  2HJE A;  2JTO A;  3LMS B;  2RNG A;  1B8W A;  2SH1 A;  1ZUE A;  1ATX A;  3D4U B;  2K2X A;  2QSG A;  1SH1 A;  1ZLI B;  1Z99 A;  2IKE A;  2H9X A;  4YIR A;  1BDS A;  1ZLH B;  1ZHH B;  3C38 A;  4GV5 A;  1APF A;  2QSH A;  2DLA A;  2MN3 A;  3KEZ A;  3MYV A;  3MCX A;  2BDS A;  1D6B A;  1WQK A;  3C30 A;  2HJ9 C;  1WXN A;  1ZUF A;  2MUB A;  2XXL A;  2QSF A;  1AHL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1H5OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN