1H7Z | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	191
structure length	191
Chain Sequence	KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 191 atoms

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191 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell receptor recognition
source organism	Human adenovirus type 3
publication title	Structure of the Fiber Head of Ad3, a Non-Car-Binding Serotype of Adenovirus pubmed doi rcsb
molecule keywords	ADENOVIRUS FIBRE PROTEIN
total genus	39
structure length	191
sequence length	191
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2001-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	1h7zA00

1UXAA 4K6VA 1QHVA 1KNBA 1QIUA 2QLKA 4XL8A 2WGTA 4XQAA 2BZVA 2J1KC 1P6AA 3EXWA 3L89A 4K6UA 4ZDGA 4WYJA 1NOBA 3BQ4A 3QNDA 1UXEA 2WBWA 4K6WA 3CNCA 2O39A 3O8EA 2J12A 4K6TA 3F0YA 2BZUA 3L88A 4LIYA 4XQBA 3N0IA 1H7ZA 1P69A 4ATZA 2WBVA 2WGUA 3EXVA 1KACA 2J2JA 1UXBA 2WSTA 2W9LC
chains in the Genus database with same CATH superfamily

1UXAA 4K6VA 2VRSA 1QHVA 1KNBA 2OJ6A 1QIUA 2QLKA 2OJ5A 4XL8A 2WGTA 1KKEA 4XQAA 2BSFA 2BT7A 2BZVA 2IUMA 2J1KC 1P6AA 2VTWA 3EXWA 3L89A 4K6UA 4ZDGA 4WYJA 1NOBA 3BQ4A 2IUNA 4D63A 3QNDA 1UXEA 2WBWA 4K6WA 3CNCA 2O39A 3O8EA 2J12A 4K6TA 3F0YA 2BZUA 3L88A 5MHSA 4LIYA 4XQBA 3N0IA 3ZPEA 1H7ZA 4ODBA 1P69A 4D62A 4ATZA 2WBVA 2WGUA 4GU3A 3EXVA 4GU4A 3S6XA 1KACA 2W9LC 2J2JA 4XC5A 3ZPFA 4CW8A 3EOYA 1UXBA 2JJLA 2WSTA 2BT8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1UXA A;  4K6V A;  1QHV A;  1KNB A;  1QIU A;  2QLK A;  4XL8 A;  2WGT A;  4XQA A;  2BZV A;  2J1K C;  1P6A A;  3EXW A;  3L89 A;  4K6U A;  4ZDG A;  4WYJ A;  1NOB A;  3BQ4 A;  3QND A;  1UXE A;  2WBW A;  4K6W A;  3CNC A;  2O39 A;  3O8E A;  2J12 A;  4K6T A;  3F0Y A;  2BZU A;  3L88 A;  4LIY A;  4XQB A;  3N0I A;  1H7Z A;  1P69 A;  4ATZ A;  2WBV A;  2WGU A;  3EXV A;  1KAC A;  2J2J A;  1UXB A;  2WST A;  2W9L C; 
#chains in the Genus database with same CATH topology
 1UXA A;  4K6V A;  2VRS A;  1QHV A;  1KNB A;  2OJ6 A;  1QIU A;  2QLK A;  2OJ5 A;  4XL8 A;  2WGT A;  1KKE A;  4XQA A;  2BSF A;  2BT7 A;  2BZV A;  2IUM A;  2J1K C;  1P6A A;  2VTW A;  3EXW A;  3L89 A;  4K6U A;  4ZDG A;  4WYJ A;  1NOB A;  3BQ4 A;  2IUN A;  4D63 A;  3QND A;  1UXE A;  2WBW A;  4K6W A;  3CNC A;  2O39 A;  3O8E A;  2J12 A;  4K6T A;  3F0Y A;  2BZU A;  3L88 A;  5MHS A;  4LIY A;  4XQB A;  3N0I A;  3ZPE A;  1H7Z A;  4ODB A;  1P69 A;  4D62 A;  4ATZ A;  2WBV A;  2WGU A;  4GU3 A;  3EXV A;  4GU4 A;  3S6X A;  1KAC A;  2W9L C;  2J2J A;  4XC5 A;  3ZPF A;  4CW8 A;  3EOY A;  1UXB A;  2JJL A;  2WST A;  2BT8 A; 
#chains in the Genus database with same CATH homology
 1UXA A;  4K6V A;  1QHV A;  1KNB A;  1QIU A;  2QLK A;  4XL8 A;  2WGT A;  4XQA A;  2BZV A;  2J1K C;  1P6A A;  3EXW A;  3L89 A;  4K6U A;  4ZDG A;  4WYJ A;  1NOB A;  3BQ4 A;  3QND A;  1UXE A;  2WBW A;  4K6W A;  3CNC A;  2O39 A;  3O8E A;  2J12 A;  4K6T A;  3F0Y A;  2BZU A;  3L88 A;  4LIY A;  4XQB A;  3N0I A;  1H7Z A;  1P69 A;  4ATZ A;  2WBV A;  2WGU A;  3EXV A;  1KAC A;  2J2J A;  1UXB A;  2WST A;  2W9L C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1H7ZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations