The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
185
|
structure length |
185
|
Chain Sequence |
TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural analysis of the mechanism of adenovirus binding to its human cellular receptor, CAR.
pubmed doi rcsb |
| molecule keywords |
PROTEIN (FIBER KNOB PROTEIN)
|
| molecule tags |
Viral protein
|
| source organism |
Human adenovirus 12
|
| total genus |
34
|
| structure length |
185
|
| sequence length |
185
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 1999-05-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00541 | Adeno_knob | Adenoviral fibre protein (knob domain) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Adenovirus pIV-related, attachment domain |
#chains in the Genus database with same CATH superfamily 3EXV A; 1KNB A; 2J12 A; 4K6W A; 3EXW A; 2BZU A; 4K6V A; 1P69 A; 4LIY A; 2WGU A; 2QLK A; 2BZV A; 4WYJ A; 2WST A; 1NOB A; 1H7Z A; 1QIU A; 1UXE A; 2WBV A; 2WGT A; 3BQ4 A; 4K6T A; 3N0I A; 4ATZ A; 2J1K C; 3CNC A; 2W9L C; 2WBW A; 2J2J A; 3QND A; 1UXA A; 4XQA A; 1KAC A; 2O39 A; 1UXB A; 3O8E A; 4XL8 A; 3L88 A; 4ZDG A; 3F0Y A; 3L89 A; 1QHV A; 4K6U A; 1P6A A; 4XQB A; #chains in the Genus database with same CATH topology 3EXV A; 2VTW A; 4ODB A; 2VRS A; 1KNB A; 2J12 A; 4D62 A; 4K6W A; 3EXW A; 2BZU A; 4K6V A; 1P69 A; 2OJ5 A; 4LIY A; 2WGU A; 2QLK A; 2IUM A; 2BZV A; 4WYJ A; 2BT7 A; 2WST A; 1NOB A; 4CW8 A; 1H7Z A; 1QIU A; 1UXE A; 1KKE A; 2WBV A; 2WGT A; 3BQ4 A; 4K6T A; 2OJ6 A; 4XC5 A; 2BT8 A; 3N0I A; 4ATZ A; 2J1K C; 4GU4 A; 3CNC A; 2W9L C; 3ZPE A; 2WBW A; 2J2J A; 3QND A; 1UXA A; 2IUN A; 4XQA A; 3EOY A; 5MHS A; 2BSF A; 1KAC A; 2O39 A; 4K6U A; 1UXB A; 2JJL A; 3S6X A; 3O8E A; 4XL8 A; 3ZPF A; 4D63 A; 3L88 A; 4ZDG A; 3F0Y A; 3L89 A; 1QHV A; 4GU3 A; 1P6A A; 4XQB A; #chains in the Genus database with same CATH homology 3EXV A; 1KNB A; 2J12 A; 4K6W A; 3EXW A; 2BZU A; 4K6V A; 1P69 A; 4LIY A; 2WGU A; 2QLK A; 2BZV A; 4WYJ A; 2WST A; 1NOB A; 1H7Z A; 1QIU A; 1UXE A; 2WBV A; 2WGT A; 3BQ4 A; 4K6T A; 3N0I A; 4ATZ A; 2J1K C; 3CNC A; 2W9L C; 2WBW A; 2J2J A; 3QND A; 1UXA A; 4XQA A; 1KAC A; 2O39 A; 1UXB A; 3O8E A; 4XL8 A; 3L88 A; 4ZDG A; 3F0Y A; 3L89 A; 1QHV A; 4K6U A; 1P6A A; 4XQB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
