1P69 | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	185
structure length	185
Chain Sequence	TPYDPLTLWTTPDPSPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 185 atoms

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185 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein/receptor
source organism	Human adenovirus a serotype 12
publication title	Structural basis for variation in adenovirus affinity for the cellular coxsackievirus and adenovirus receptor. pubmed doi rcsb
molecule keywords	Fiber protein
total genus	37
structure length	185
sequence length	185
ec nomenclature
pdb deposition date	2003-04-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	1p69A00

1KNBA 4K6WA 1H7ZA 1QHVA 1KACA 3O8EA 4K6VA 3N0IA 1P69A 2BZVA 4K6TA 3EXWA 4LIYA 1UXAA 2W9LC 2J12A 3QNDA 4ATZA 4XQBA 4XL8A 2WGTA 2BZUA 1UXEA 2WGUA 2WSTA 4ZDGA 3BQ4A 2WBVA 3L88A 2J2JA 2WBWA 3F0YA 3L89A 3EXVA 4K6UA 1UXBA 1QIUA 2J1KC 4WYJA 2QLKA 2O39A 1NOBA 3CNCA 4XQAA 1P6AA
chains in the Genus database with same CATH superfamily

1KNBA 4K6WA 4GU3A 1H7ZA 1QHVA 1KACA 1KKEA 3O8EA 4K6VA 3N0IA 1P69A 2BZVA 4K6TA 2VTWA 3EXWA 4LIYA 2OJ6A 2BT7A 3ZPEA 1UXAA 2W9LC 2J12A 3QNDA 4XC5A 4ATZA 4GU4A 2BT8A 2JJLA 2BSFA 4ODBA 4XQBA 4XL8A 2WGTA 3ZPFA 2BZUA 1UXEA 2WGUA 2WSTA 4ZDGA 5MHSA 3EOYA 3BQ4A 2WBVA 4D63A 2OJ5A 3L88A 2J2JA 2WBWA 3F0YA 3L89A 3EXVA 2VRSA 4K6UA 1UXBA 1QIUA 2IUMA 2J1KC 2QLKA 2O39A 4WYJA 1NOBA 3CNCA 4XQAA 3S6XA 4CW8A 2IUNA 1P6AA 4D62A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1KNB A;  4K6W A;  1H7Z A;  1QHV A;  1KAC A;  3O8E A;  4K6V A;  3N0I A;  1P69 A;  2BZV A;  4K6T A;  3EXW A;  4LIY A;  1UXA A;  2W9L C;  2J12 A;  3QND A;  4ATZ A;  4XQB A;  4XL8 A;  2WGT A;  2BZU A;  1UXE A;  2WGU A;  2WST A;  4ZDG A;  3BQ4 A;  2WBV A;  3L88 A;  2J2J A;  2WBW A;  3F0Y A;  3L89 A;  3EXV A;  4K6U A;  1UXB A;  1QIU A;  2J1K C;  4WYJ A;  2QLK A;  2O39 A;  1NOB A;  3CNC A;  4XQA A;  1P6A A; 
#chains in the Genus database with same CATH topology
 1KNB A;  4K6W A;  4GU3 A;  1H7Z A;  1QHV A;  1KAC A;  1KKE A;  3O8E A;  4K6V A;  3N0I A;  1P69 A;  2BZV A;  4K6T A;  2VTW A;  3EXW A;  4LIY A;  2OJ6 A;  2BT7 A;  3ZPE A;  1UXA A;  2W9L C;  2J12 A;  3QND A;  4XC5 A;  4ATZ A;  4GU4 A;  2BT8 A;  2JJL A;  2BSF A;  4ODB A;  4XQB A;  4XL8 A;  2WGT A;  3ZPF A;  2BZU A;  1UXE A;  2WGU A;  2WST A;  4ZDG A;  5MHS A;  3EOY A;  3BQ4 A;  2WBV A;  4D63 A;  2OJ5 A;  3L88 A;  2J2J A;  2WBW A;  3F0Y A;  3L89 A;  3EXV A;  2VRS A;  4K6U A;  1UXB A;  1QIU A;  2IUM A;  2J1K C;  2QLK A;  2O39 A;  4WYJ A;  1NOB A;  3CNC A;  4XQA A;  3S6X A;  4CW8 A;  2IUN A;  1P6A A;  4D62 A; 
#chains in the Genus database with same CATH homology
 1KNB A;  4K6W A;  1H7Z A;  1QHV A;  1KAC A;  3O8E A;  4K6V A;  3N0I A;  1P69 A;  2BZV A;  4K6T A;  3EXW A;  4LIY A;  1UXA A;  2W9L C;  2J12 A;  3QND A;  4ATZ A;  4XQB A;  4XL8 A;  2WGT A;  2BZU A;  1UXE A;  2WGU A;  2WST A;  4ZDG A;  3BQ4 A;  2WBV A;  3L88 A;  2J2J A;  2WBW A;  3F0Y A;  3L89 A;  3EXV A;  4K6U A;  1UXB A;  1QIU A;  2J1K C;  4WYJ A;  2QLK A;  2O39 A;  1NOB A;  3CNC A;  4XQA A;  1P6A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1P69A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations