1PVLA

Structure of the panton-valentine leucocidin f component from staphylococcus aureus
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
301
structure length
298
Chain Sequence
AQHITPVSEKKVDDKITLYKTTATSDSDKLKISQILTFNFIKDKSYDKDTLILKAAGNIYSGYTKPNPKDTISSQFYWGSKYNISINSDSNDSVNVVDYAPKNQNEEFQVQQTVGYSYGGDINISNGLSGGGKSFSETINYKQESYRTSLDKRTNFKKIGWDVEAHKIMNNGWGPYGRDSYHSTYGNEMFLGSRQSNLNAGQNFLEYHKMPVLSRGNFNPEFIGVLSRKQNAAKKSKITVTYQREMDRYTNFWNQLHWIGNNYKDENRATHTSIYEVDWENHTVKLIDTQSKEKNPMS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of a Staphylococcus aureus leucocidin component (LukF-PV) reveals the fold of the water-soluble species of a family of transmembrane pore-forming toxins.
pubmed doi rcsb
molecule tags Leucotoxin
molecule keywords LEUCOCIDIN
total genus 76
structure length 298
sequence length 301
ec nomenclature
pdb deposition date 1999-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 1pvlA00
4P1YA 2LKFA 2QK7B 4IYCA 2YGTA 1PVLA 3M4EA 4H56A 4IDJA 4TW1A 4P1XB 1LKFA 4IYTA 4P1YB 3M4DA 3M3RA 3B07A 3M2LA 4IYAA 3O44A 4TW1B 1T5RA 4U6VA 5K59A 4Q7GA 3B07B 7AHLA 4J0OA 4IZLA 3ANZA 4I0NA 2QK7A 4P24A 3ROHA 5K59C 3LKFA 4YHDA 4P1XA
chains in the Genus database with same CATH superfamily
4P1YA 2LKFA 2QK7B 4IYCA 2YGTA 1PVLA 3M4EA 4H56A 4IDJA 4TW1A 4P1XB 1LKFA 4IYTA 4P1YB 3M4DA 3M3RA 3B07A 1XEZA 3M2LA 4IYAA 3O44A 4TW1B 1T5RA 4U6VA 5K59A 4Q7GA 3B07B 7AHLA 4J0OA 4IZLA 3ANZA 4I0NA 2QK7A 4P24A 3ROHA 5K59C 3LKFA 4YHDA 4P1XA
chains in the Genus database with same CATH topology
4P1YA 2LKFA 2QK7B 4IYCA 2YGTA 1PVLA 3M4EA 4H56A 4IDJA 4TW1A 4P1XB 1LKFA 4IYTA 4P1YB 3M4DA 3M3RA 3B07A 3M2LA 4IYAA 3O44A 4TW1B 1T5RA 4U6VA 5K59A 4Q7GA 3B07B 7AHLA 4J0OA 4IZLA 3ANZA 4I0NA 2QK7A 4P24A 3ROHA 5K59C 3LKFA 4YHDA 4P1XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P1Y A;  2LKF A;  2QK7 B;  4IYC A;  2YGT A;  1PVL A;  3M4E A;  4H56 A;  4IDJ A;  4TW1 A;  4P1X B;  1LKF A;  4IYT A;  4P1Y B;  3M4D A;  3M3R A;  3B07 A;  3M2L A;  4IYA A;  3O44 A;  4TW1 B;  1T5R A;  4U6V A;  5K59 A;  4Q7G A;  3B07 B;  7AHL A;  4J0O A;  4IZL A;  3ANZ A;  4I0N A;  2QK7 A;  4P24 A;  3ROH A;  5K59 C;  3LKF A;  4YHD A;  4P1X A; 
#chains in the Genus database with same CATH topology
 4P1Y A;  2LKF A;  2QK7 B;  4IYC A;  2YGT A;  1PVL A;  3M4E A;  4H56 A;  4IDJ A;  4TW1 A;  4P1X B;  1LKF A;  4IYT A;  4P1Y B;  3M4D A;  3M3R A;  3B07 A;  1XEZ A;  3M2L A;  4IYA A;  3O44 A;  4TW1 B;  1T5R A;  4U6V A;  5K59 A;  4Q7G A;  3B07 B;  7AHL A;  4J0O A;  4IZL A;  3ANZ A;  4I0N A;  2QK7 A;  4P24 A;  3ROH A;  5K59 C;  3LKF A;  4YHD A;  4P1X A; 
#chains in the Genus database with same CATH homology
 4P1Y A;  2LKF A;  2QK7 B;  4IYC A;  2YGT A;  1PVL A;  3M4E A;  4H56 A;  4IDJ A;  4TW1 A;  4P1X B;  1LKF A;  4IYT A;  4P1Y B;  3M4D A;  3M3R A;  3B07 A;  3M2L A;  4IYA A;  3O44 A;  4TW1 B;  1T5R A;  4U6V A;  5K59 A;  4Q7G A;  3B07 B;  7AHL A;  4J0O A;  4IZL A;  3ANZ A;  4I0N A;  2QK7 A;  4P24 A;  3ROH A;  5K59 C;  3LKF A;  4YHD A;  4P1X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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