1QHV | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	195
structure length	195
Chain Sequence	AITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTETSEVSTYSMSFTWSWESGKYTTETFATNSYTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human adenovirus 2
publication title	Structure of the human adenovirus serotype 2 fiber head domain at 1.5 A resolution. pubmed doi rcsb
molecule keywords	PROTEIN (ADENOVIRUS FIBRE)
total genus	46
structure length	195
sequence length	195
ec nomenclature
pdb deposition date	1999-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	1qhvA00

1UXEA 4WYJA 3L89A 1P69A 3BQ4A 4K6WA 4K6VA 2WGTA 3L88A 4K6UA 4XL8A 2J12A 4ZDGA 1QHVA 2BZUA 4XQBA 2BZVA 1P6AA 4XQAA 2WBWA 2J2JA 1UXBA 2O39A 4ATZA 1UXAA 1KNBA 1H7ZA 3O8EA 2WBVA 1NOBA 2QLKA 3EXWA 2W9LC 2J1KC 3CNCA 4K6TA 2WSTA 3QNDA 1KACA 3N0IA 3EXVA 1QIUA 2WGUA 4LIYA 3F0YA
chains in the Genus database with same CATH superfamily

1UXEA 2BT7A 4WYJA 2OJ5A 1P69A 3L89A 3BQ4A 4K6WA 2VRSA 4K6VA 2WGTA 2IUNA 3L88A 4K6UA 4ODBA 4XL8A 3S6XA 1KKEA 2J12A 4D62A 4GU3A 1QHVA 2BZUA 4ZDGA 4XQBA 2BZVA 1P6AA 2OJ6A 2IUMA 3ZPEA 4XC5A 2WBWA 4XQAA 2J2JA 3EOYA 5MHSA 1UXBA 2BT8A 4GU4A 2O39A 4ATZA 1UXAA 1KNBA 2VTWA 1H7ZA 3O8EA 2WBVA 2JJLA 1NOBA 2BSFA 2QLKA 3EXWA 4D63A 2W9LC 2J1KC 3CNCA 4K6TA 2WSTA 3ZPFA 3QNDA 1KACA 3N0IA 3EXVA 1QIUA 2WGUA 4LIYA 3F0YA 4CW8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1UXE A;  4WYJ A;  3L89 A;  1P69 A;  3BQ4 A;  4K6W A;  4K6V A;  2WGT A;  3L88 A;  4K6U A;  4XL8 A;  2J12 A;  4ZDG A;  1QHV A;  2BZU A;  4XQB A;  2BZV A;  1P6A A;  4XQA A;  2WBW A;  2J2J A;  1UXB A;  2O39 A;  4ATZ A;  1UXA A;  1KNB A;  1H7Z A;  3O8E A;  2WBV A;  1NOB A;  2QLK A;  3EXW A;  2W9L C;  2J1K C;  3CNC A;  4K6T A;  2WST A;  3QND A;  1KAC A;  3N0I A;  3EXV A;  1QIU A;  2WGU A;  4LIY A;  3F0Y A; 
#chains in the Genus database with same CATH topology
 1UXE A;  2BT7 A;  4WYJ A;  2OJ5 A;  1P69 A;  3L89 A;  3BQ4 A;  4K6W A;  2VRS A;  4K6V A;  2WGT A;  2IUN A;  3L88 A;  4K6U A;  4ODB A;  4XL8 A;  3S6X A;  1KKE A;  2J12 A;  4D62 A;  4GU3 A;  1QHV A;  2BZU A;  4ZDG A;  4XQB A;  2BZV A;  1P6A A;  2OJ6 A;  2IUM A;  3ZPE A;  4XC5 A;  2WBW A;  4XQA A;  2J2J A;  3EOY A;  5MHS A;  1UXB A;  2BT8 A;  4GU4 A;  2O39 A;  4ATZ A;  1UXA A;  1KNB A;  2VTW A;  1H7Z A;  3O8E A;  2WBV A;  2JJL A;  1NOB A;  2BSF A;  2QLK A;  3EXW A;  4D63 A;  2W9L C;  2J1K C;  3CNC A;  4K6T A;  2WST A;  3ZPF A;  3QND A;  1KAC A;  3N0I A;  3EXV A;  1QIU A;  2WGU A;  4LIY A;  3F0Y A;  4CW8 A; 
#chains in the Genus database with same CATH homology
 1UXE A;  4WYJ A;  3L89 A;  1P69 A;  3BQ4 A;  4K6W A;  4K6V A;  2WGT A;  3L88 A;  4K6U A;  4XL8 A;  2J12 A;  4ZDG A;  1QHV A;  2BZU A;  4XQB A;  2BZV A;  1P6A A;  4XQA A;  2WBW A;  2J2J A;  1UXB A;  2O39 A;  4ATZ A;  1UXA A;  1KNB A;  1H7Z A;  3O8E A;  2WBV A;  1NOB A;  2QLK A;  3EXW A;  2W9L C;  2J1K C;  3CNC A;  4K6T A;  2WST A;  3QND A;  1KAC A;  3N0I A;  3EXV A;  1QIU A;  2WGU A;  4LIY A;  3F0Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QHVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations