1SH1 | Genus

Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	48
structure length	48
Chain Sequence	AACKCDDEGPDIRTAPLTGTVDLGSCNAGWEKCASYYTIIADCCRKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfc03669d7e7f0b0e889ff2/pdb.gz): 1154 ms

reading 48 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

48 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 14 ms

Adding embedded #jmolscript: select ({0:47});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Neurotoxin
source organism	Stichodactyla helianthus
publication title	Solution structure of neurotoxin I from the sea anemone Stichodactyla helianthus. A nuclear magnetic resonance, distance geometry, and restrained molecular dynamics study. pubmed rcsb
molecule keywords	NEUROTOXIN I
total genus	8
structure length	48
sequence length	48
ec nomenclature
pdb deposition date	1990-05-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00706	Toxin_4	Anenome neurotoxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1sh1A00

1ZUEA 1APFA 2SH1A 3LMSB 1ZLIB 1WQKA 4GV5A 3D4UB 2JTOA 1D6BA 1Z99A 1SHIA 1SH1A 2RNGA 2MN3A 1ZUFA 1ZLHB 1H5OA 1AHLA 1WXNA 2MUBA 1BDSA 2K2XA 1ATXA 2BDSA 1B8WA 2H9XA
chains in the Genus database with same CATH superfamily

1ZUEA 1APFA 2SH1A 3LMSB 1ZLIB 1GKUB 1WQKA 4GV5A 2QSHA 3D4UB 2XXLA 3C38A 1ZHHB 2JTOA 2B9KA 4YIRA 1D6BA 1Z99A 1SHIA 1SH1A 3KEZA 1EL6A 2HJ9C 2RNGA 2QSFA 2MN3A 1ZUFA 1ZLHB 3IF4A 2IKEA 1H5OA 1GL9B 1AHLA 1WXNA 3MCXA 2MUBA 1BDSA 2K2XA 1ATXA 2QSGA 2BDSA 1B8WA 2IKDA 2DLAA 3C30A 2H9XA 2HJEA 3MYVA 2JR3A
chains in the Genus database with same CATH topology

1ZUEA 1APFA 2SH1A 3LMSB 1ZLIB 1WQKA 4GV5A 2QSHA 3D4UB 2XXLA 3C38A 1ZHHB 2JTOA 2B9KA 4YIRA 1D6BA 1Z99A 1SHIA 1SH1A 3KEZA 2HJ9C 2RNGA 2QSFA 2MN3A 1ZUFA 1ZLHB 2IKEA 1H5OA 1AHLA 1WXNA 3MCXA 2MUBA 1BDSA 2K2XA 1ATXA 2QSGA 2BDSA 1B8WA 2IKDA 2DLAA 3C30A 2H9XA 2HJEA 3MYVA 2JR3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1ZUE A;  1APF A;  2SH1 A;  3LMS B;  1ZLI B;  1WQK A;  4GV5 A;  3D4U B;  2JTO A;  1D6B A;  1Z99 A;  1SHI A;  1SH1 A;  2RNG A;  2MN3 A;  1ZUF A;  1ZLH B;  1H5O A;  1AHL A;  1WXN A;  2MUB A;  1BDS A;  2K2X A;  1ATX A;  2BDS A;  1B8W A;  2H9X A; 
#chains in the Genus database with same CATH topology
 1ZUE A;  1APF A;  2SH1 A;  3LMS B;  1ZLI B;  1GKU B;  1WQK A;  4GV5 A;  2QSH A;  3D4U B;  2XXL A;  3C38 A;  1ZHH B;  2JTO A;  2B9K A;  4YIR A;  1D6B A;  1Z99 A;  1SHI A;  1SH1 A;  3KEZ A;  1EL6 A;  2HJ9 C;  2RNG A;  2QSF A;  2MN3 A;  1ZUF A;  1ZLH B;  3IF4 A;  2IKE A;  1H5O A;  1GL9 B;  1AHL A;  1WXN A;  3MCX A;  2MUB A;  1BDS A;  2K2X A;  1ATX A;  2QSG A;  2BDS A;  1B8W A;  2IKD A;  2DLA A;  3C30 A;  2H9X A;  2HJE A;  3MYV A;  2JR3 A; 
#chains in the Genus database with same CATH homology
 1ZUE A;  1APF A;  2SH1 A;  3LMS B;  1ZLI B;  1WQK A;  4GV5 A;  2QSH A;  3D4U B;  2XXL A;  3C38 A;  1ZHH B;  2JTO A;  2B9K A;  4YIR A;  1D6B A;  1Z99 A;  1SHI A;  1SH1 A;  3KEZ A;  2HJ9 C;  2RNG A;  2QSF A;  2MN3 A;  1ZUF A;  1ZLH B;  2IKE A;  1H5O A;  1AHL A;  1WXN A;  3MCX A;  2MUB A;  1BDS A;  2K2X A;  1ATX A;  2QSG A;  2BDS A;  1B8W A;  2IKD A;  2DLA A;  3C30 A;  2H9X A;  2HJE A;  3MYV A;  2JR3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SH1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations