1SHI | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	48
structure length	48
Chain Sequence	AACKCDDEGPDIRTAPLTGTVDLGSCNAGWEKCASYYTIIADCCRKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 48 atoms

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48 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Neurotoxin
source organism	Stichodactyla helianthus
publication title	Refined structure in solution of the sea anemone neurotoxin ShI. pubmed rcsb
molecule keywords	NEUROTOXIN I
total genus	2
structure length	48
sequence length	48
ec nomenclature
pdb deposition date	1994-12-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00706	Toxin_4	Anenome neurotoxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1shiA00

1ZUFA 2H9XA 1D6BA 2MN3A 3LMSB 1ZUEA 1Z99A 3D4UB 1ATXA 2SH1A 1BDSA 2BDSA 2MUBA 2JTOA 1WXNA 1SHIA 1AHLA 1B8WA 4GV5A 1H5OA 1SH1A 1ZLIB 1ZLHB 1APFA 2K2XA 1WQKA 2RNGA
chains in the Genus database with same CATH superfamily

1ZUFA 3C38A 2QSFA 3MYVA 1APFA 2IKEA 2H9XA 2JR3A 3KEZA 1GL9B 2HJ9C 1D6BA 2DLAA 2MN3A 3LMSB 1ZUEA 1Z99A 3D4UB 2QSHA 2SH1A 1BDSA 2BDSA 1ATXA 3C30A 2MUBA 2QSGA 1GKUB 2JTOA 1WXNA 1ZHHB 3MCXA 1SHIA 3IF4A 1AHLA 2HJEA 1B8WA 4GV5A 2IKDA 1H5OA 1SH1A 1ZLIB 1ZLHB 1EL6A 4YIRA 2XXLA 2K2XA 2B9KA 1WQKA 2RNGA
chains in the Genus database with same CATH topology

1ZUFA 3C38A 2QSFA 3MYVA 1APFA 2IKEA 2H9XA 2JR3A 3KEZA 2HJ9C 1D6BA 2DLAA 2MN3A 3LMSB 1ZUEA 1Z99A 3D4UB 2QSHA 2SH1A 1BDSA 2BDSA 1ATXA 3C30A 2MUBA 2QSGA 2JTOA 1WXNA 1ZHHB 3MCXA 1SHIA 1AHLA 2HJEA 1B8WA 4GV5A 2IKDA 1H5OA 1SH1A 1ZLIB 1ZLHB 4YIRA 2XXLA 2K2XA 2B9KA 1WQKA 2RNGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1ZUF A;  2H9X A;  1D6B A;  2MN3 A;  3LMS B;  1ZUE A;  1Z99 A;  3D4U B;  1ATX A;  2SH1 A;  1BDS A;  2BDS A;  2MUB A;  2JTO A;  1WXN A;  1SHI A;  1AHL A;  1B8W A;  4GV5 A;  1H5O A;  1SH1 A;  1ZLI B;  1ZLH B;  1APF A;  2K2X A;  1WQK A;  2RNG A; 
#chains in the Genus database with same CATH topology
 1ZUF A;  3C38 A;  2QSF A;  3MYV A;  1APF A;  2IKE A;  2H9X A;  2JR3 A;  3KEZ A;  1GL9 B;  2HJ9 C;  1D6B A;  2DLA A;  2MN3 A;  3LMS B;  1ZUE A;  1Z99 A;  3D4U B;  2QSH A;  2SH1 A;  1BDS A;  2BDS A;  1ATX A;  3C30 A;  2MUB A;  2QSG A;  1GKU B;  2JTO A;  1WXN A;  1ZHH B;  3MCX A;  1SHI A;  3IF4 A;  1AHL A;  2HJE A;  1B8W A;  4GV5 A;  2IKD A;  1H5O A;  1SH1 A;  1ZLI B;  1ZLH B;  1EL6 A;  4YIR A;  2XXL A;  2K2X A;  2B9K A;  1WQK A;  2RNG A; 
#chains in the Genus database with same CATH homology
 1ZUF A;  3C38 A;  2QSF A;  3MYV A;  1APF A;  2IKE A;  2H9X A;  2JR3 A;  3KEZ A;  2HJ9 C;  1D6B A;  2DLA A;  2MN3 A;  3LMS B;  1ZUE A;  1Z99 A;  3D4U B;  2QSH A;  2SH1 A;  1BDS A;  2BDS A;  1ATX A;  3C30 A;  2MUB A;  2QSG A;  2JTO A;  1WXN A;  1ZHH B;  3MCX A;  1SHI A;  1AHL A;  2HJE A;  1B8W A;  4GV5 A;  2IKD A;  1H5O A;  1SH1 A;  1ZLI B;  1ZLH B;  4YIR A;  2XXL A;  2K2X A;  2B9K A;  1WQK A;  2RNG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SHIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations