1T5RA

Structure of the panton-valentine leucocidin s component from staphylococcus aureus
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
282
structure length
265
Chain Sequence
NIENIGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of leucotoxin S component: new insight into the Staphylococcal beta-barrel pore-forming toxins.
pubmed doi rcsb
molecule tags Unknown function
molecule keywords LukS-PV
total genus 74
structure length 265
sequence length 282
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2004-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 1t5rA00
3ANZA 4IDJA 3M2LA 4TW1A 4P1YA 4YHDA 5K59A 4IYCA 3M4EA 3LKFA 4J0OA 4P24A 2YGTA 3M4DA 4H56A 2QK7B 4U6VA 4Q7GA 4P1XB 2LKFA 4IYTA 1LKFA 1T5RA 3M3RA 2QK7A 3B07B 5K59C 1PVLA 4P1XA 4IYAA 4I0NA 3O44A 7AHLA 4IZLA 3B07A 3ROHA 4TW1B 4P1YB
chains in the Genus database with same CATH superfamily
3ANZA 4IDJA 3M2LA 4TW1A 4P1YA 1XEZA 4YHDA 5K59A 4IYCA 3M4EA 3LKFA 4J0OA 4P24A 2YGTA 3M4DA 4H56A 2QK7B 4U6VA 4Q7GA 4P1XB 2LKFA 4IYTA 1LKFA 1T5RA 3M3RA 2QK7A 3B07B 5K59C 1PVLA 4P1XA 4IYAA 4I0NA 3O44A 7AHLA 4IZLA 3B07A 3ROHA 4TW1B 4P1YB
chains in the Genus database with same CATH topology
3ANZA 4IDJA 3M2LA 4TW1A 4P1YA 4YHDA 5K59A 4IYCA 3M4EA 3LKFA 4J0OA 4P24A 2YGTA 3M4DA 4H56A 2QK7B 4U6VA 4Q7GA 4P1XB 2LKFA 4IYTA 1LKFA 1T5RA 3M3RA 2QK7A 3B07B 5K59C 1PVLA 4P1XA 4IYAA 4I0NA 3O44A 7AHLA 4IZLA 3B07A 3ROHA 4TW1B 4P1YB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ANZ A;  4IDJ A;  3M2L A;  4TW1 A;  4P1Y A;  4YHD A;  5K59 A;  4IYC A;  3M4E A;  3LKF A;  4J0O A;  4P24 A;  2YGT A;  3M4D A;  4H56 A;  2QK7 B;  4U6V A;  4Q7G A;  4P1X B;  2LKF A;  4IYT A;  1LKF A;  1T5R A;  3M3R A;  2QK7 A;  3B07 B;  5K59 C;  1PVL A;  4P1X A;  4IYA A;  4I0N A;  3O44 A;  7AHL A;  4IZL A;  3B07 A;  3ROH A;  4TW1 B;  4P1Y B; 
#chains in the Genus database with same CATH topology
 3ANZ A;  4IDJ A;  3M2L A;  4TW1 A;  4P1Y A;  1XEZ A;  4YHD A;  5K59 A;  4IYC A;  3M4E A;  3LKF A;  4J0O A;  4P24 A;  2YGT A;  3M4D A;  4H56 A;  2QK7 B;  4U6V A;  4Q7G A;  4P1X B;  2LKF A;  4IYT A;  1LKF A;  1T5R A;  3M3R A;  2QK7 A;  3B07 B;  5K59 C;  1PVL A;  4P1X A;  4IYA A;  4I0N A;  3O44 A;  7AHL A;  4IZL A;  3B07 A;  3ROH A;  4TW1 B;  4P1Y B; 
#chains in the Genus database with same CATH homology
 3ANZ A;  4IDJ A;  3M2L A;  4TW1 A;  4P1Y A;  4YHD A;  5K59 A;  4IYC A;  3M4E A;  3LKF A;  4J0O A;  4P24 A;  2YGT A;  3M4D A;  4H56 A;  2QK7 B;  4U6V A;  4Q7G A;  4P1X B;  2LKF A;  4IYT A;  1LKF A;  1T5R A;  3M3R A;  2QK7 A;  3B07 B;  5K59 C;  1PVL A;  4P1X A;  4IYA A;  4I0N A;  3O44 A;  7AHL A;  4IZL A;  3B07 A;  3ROH A;  4TW1 B;  4P1Y B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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