1UXA | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	185
structure length	185
Chain Sequence	YDTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 185 atoms

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185 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus type 37
publication title	Crystal Structure of Species D Adenovirus Fiber Knobs and Their Sialic Acid Binding Sites pubmed doi rcsb
molecule keywords	FIBER PROTEIN
total genus	43
structure length	185
sequence length	185
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2004-02-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	1uxaA00

2J12A 2WBWA 4K6TA 2WGTA 3O8EA 4XQBA 1QHVA 3F0YA 2J2JA 2W9LC 3CNCA 2WBVA 3L89A 4ZDGA 3L88A 4LIYA 4K6VA 1QIUA 1H7ZA 2O39A 2QLKA 2J1KC 4ATZA 2WGUA 3N0IA 3QNDA 1KNBA 3EXWA 2BZVA 1UXEA 3EXVA 4XQAA 4K6UA 2WSTA 1P69A 4XL8A 1UXBA 4WYJA 1P6AA 3BQ4A 2BZUA 1NOBA 1KACA 1UXAA 4K6WA
chains in the Genus database with same CATH superfamily

2OJ5A 2JJLA 2J12A 2WBWA 4K6TA 2WGTA 3O8EA 2BT8A 4XQBA 1QHVA 3F0YA 5MHSA 2J2JA 2W9LC 3CNCA 4GU4A 2WBVA 3L89A 4ZDGA 3L88A 4XC5A 3ZPEA 4LIYA 4K6VA 1QIUA 2IUNA 2VRSA 1H7ZA 4CW8A 4D63A 2O39A 2QLKA 2J1KC 4ATZA 2IUMA 2WGUA 3N0IA 2VTWA 3QNDA 1KNBA 3EXWA 2BZVA 1UXEA 2BT7A 3EXVA 1KKEA 4GU3A 2BSFA 4XQAA 3S6XA 4K6UA 2WSTA 1P69A 4ODBA 4XL8A 1UXBA 4WYJA 3EOYA 4D62A 1P6AA 3BQ4A 2BZUA 3ZPFA 1NOBA 1KACA 2OJ6A 1UXAA 4K6WA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2J12 A;  2WBW A;  4K6T A;  2WGT A;  3O8E A;  4XQB A;  1QHV A;  3F0Y A;  2J2J A;  2W9L C;  3CNC A;  2WBV A;  3L89 A;  4ZDG A;  3L88 A;  4LIY A;  4K6V A;  1QIU A;  1H7Z A;  2O39 A;  2QLK A;  2J1K C;  4ATZ A;  2WGU A;  3N0I A;  3QND A;  1KNB A;  3EXW A;  2BZV A;  1UXE A;  3EXV A;  4XQA A;  4K6U A;  2WST A;  1P69 A;  4XL8 A;  1UXB A;  4WYJ A;  1P6A A;  3BQ4 A;  2BZU A;  1NOB A;  1KAC A;  1UXA A;  4K6W A; 
#chains in the Genus database with same CATH topology
 2OJ5 A;  2JJL A;  2J12 A;  2WBW A;  4K6T A;  2WGT A;  3O8E A;  2BT8 A;  4XQB A;  1QHV A;  3F0Y A;  5MHS A;  2J2J A;  2W9L C;  3CNC A;  4GU4 A;  2WBV A;  3L89 A;  4ZDG A;  3L88 A;  4XC5 A;  3ZPE A;  4LIY A;  4K6V A;  1QIU A;  2IUN A;  2VRS A;  1H7Z A;  4CW8 A;  4D63 A;  2O39 A;  2QLK A;  2J1K C;  4ATZ A;  2IUM A;  2WGU A;  3N0I A;  2VTW A;  3QND A;  1KNB A;  3EXW A;  2BZV A;  1UXE A;  2BT7 A;  3EXV A;  1KKE A;  4GU3 A;  2BSF A;  4XQA A;  3S6X A;  4K6U A;  2WST A;  1P69 A;  4ODB A;  4XL8 A;  1UXB A;  4WYJ A;  3EOY A;  4D62 A;  1P6A A;  3BQ4 A;  2BZU A;  3ZPF A;  1NOB A;  1KAC A;  2OJ6 A;  1UXA A;  4K6W A; 
#chains in the Genus database with same CATH homology
 2J12 A;  2WBW A;  4K6T A;  2WGT A;  3O8E A;  4XQB A;  1QHV A;  3F0Y A;  2J2J A;  2W9L C;  3CNC A;  2WBV A;  3L89 A;  4ZDG A;  3L88 A;  4LIY A;  4K6V A;  1QIU A;  1H7Z A;  2O39 A;  2QLK A;  2J1K C;  4ATZ A;  2WGU A;  3N0I A;  3QND A;  1KNB A;  3EXW A;  2BZV A;  1UXE A;  3EXV A;  4XQA A;  4K6U A;  2WST A;  1P69 A;  4XL8 A;  1UXB A;  4WYJ A;  1P6A A;  3BQ4 A;  2BZU A;  1NOB A;  1KAC A;  1UXA A;  4K6W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1UXAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations