1Y5EA

Crystal structure of molybdenum cofactor biosynthesis protein b
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
157
structure length
157
Chain Sequence
KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPELGHITFELHR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (15-21)AH1 (31-43)S5 (128-132)TI2 (26-29)TI3 (27-30)AH2 (57-69)S2 (46-53)S3 (75-79)3H1 (119-121)TI5 (85-88)AH3 (89-96)AH4 (103-116)S4 (100-101)TVIII1 (98-101)S6 (135-139)TIV1 (121-125)3H2 (150-153)TIV2 (131-134)AH5 (144-149)TI1 (22-25)Updating...
connected with : NaN
publication title Crystal structure of Molybdenum cofactor biosynthesis protein B
rcsb
molecule tags Biosynthetic protein
source organism Bacillus cereus
molecule keywords Molybdenum cofactor biosynthesis protein B
total genus 48
structure length 157
sequence length 157
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 1y5eA00
2NQQA 4PD0A 1T3EA 2G2CA 1JLJA 5G2SA 4TK3A 1O8OA 1XI8A 3MCHA 4TK4A 5ERRA 4TK1A 1UUXA 1WU2A 3MCJA 1MKZA 3MCIA 4TWGA 2F7WA 1Y5EA 2NQNA 2NQUA 2NQVA 1UZ5A 2NRPA 2G4RA 1O8NA 4UUXA 1DI6A 5ERUA 4U90A 1FC5A 2F7YA 2NQSA 2NQMA 5G2RA 5ERQA 1G8RA 3KBQA 4CTAB 1R2KA 4CT9A 4PD1A 5ERVA 1EAVA 1DI7A 4CTAA 2NQRA 4U91A 1UUYA 1G8LA 2NRSA 4XCWA 3IWTA 3TCRA 1O8QA 2FTSA 2NQKA 2PBQA 4NWOA 2IS8A 2FU3A 3RFQA 3OI9A 5ERSA 4CT8A 5ERTA 3PZYA 4LHBA 2QQ1A 4UOCA 2NROA 4UUWA 1IHCA 3K6AA
chains in the Genus database with same CATH superfamily
4PD0A 1T3EA 1UUXA 4TWGA 2NQNA 1Y5EA 4UUXA 4U90A 2F7YA 2NQSA 2NQMA 1DI7A 4U91A 2NRSA 2NQKA 2IS8A 3RFQA 2QQ1A 4UUWA 2NQQA 2G2CA 1JLJA 4TK3A 1O8OA 4TK1A 1MKZA 3MCIA 2F7WA 2NQUA 1UZ5A 1DI6A 3DQQA 5ERQA 1G8RA 3KBQA 4PD1A 4CTAA 1UUYA 1O8QA 2PBQA 4NWOA 4UOCA 3K6AA 5G2SA 3MCHA 4TK4A 5ERRA 3MCJA 4XCWA 5G2RA 4CTAB 1R2KA 5ERVA 1G8LA 3TCRA 3IWTA 2FTSA 2FU3A 5ERTA 3PZYA 4LHBA 5DMHA 1IHCA 1XI8A 1WU2A 2NQVA 5ERUA 2NRPA 2G4RA 1O8NA 1FC5A 4CT9A 1EAVA 2NQRA 3OI9A 4CT8A 2NROA 1YZYA 5ERSA
chains in the Genus database with same CATH topology
2NQQA 4PD0A 1T3EA 2G2CA 1JLJA 5G2SA 4TK3A 1O8OA 1XI8A 3MCHA 4TK4A 5ERRA 4TK1A 1UUXA 1WU2A 3MCJA 1MKZA 3MCIA 4TWGA 2F7WA 1Y5EA 2NQNA 2NQUA 2NQVA 1UZ5A 2NRPA 2G4RA 1O8NA 4UUXA 1DI6A 5ERUA 4U90A 1FC5A 2F7YA 2NQSA 2NQMA 5G2RA 5ERQA 1G8RA 3KBQA 4CTAB 1R2KA 4CT9A 4PD1A 5ERVA 1EAVA 1DI7A 4CTAA 2NQRA 4U91A 1UUYA 1G8LA 2NRSA 4XCWA 3IWTA 3TCRA 1O8QA 2FTSA 2NQKA 2PBQA 4NWOA 2IS8A 2FU3A 3RFQA 3OI9A 5ERSA 4CT8A 5ERTA 3PZYA 4LHBA 2QQ1A 4UOCA 2NROA 4UUWA 1IHCA 3K6AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NQQ A;  4PD0 A;  1T3E A;  2G2C A;  1JLJ A;  5G2S A;  4TK3 A;  1O8O A;  1XI8 A;  3MCH A;  4TK4 A;  5ERR A;  4TK1 A;  1UUX A;  1WU2 A;  3MCJ A;  1MKZ A;  3MCI A;  4TWG A;  2F7W A;  1Y5E A;  2NQN A;  2NQU A;  2NQV A;  1UZ5 A;  2NRP A;  2G4R A;  1O8N A;  4UUX A;  1DI6 A;  5ERU A;  4U90 A;  1FC5 A;  2F7Y A;  2NQS A;  2NQM A;  5G2R A;  5ERQ A;  1G8R A;  3KBQ A;  4CTA B;  1R2K A;  4CT9 A;  4PD1 A;  5ERV A;  1EAV A;  1DI7 A;  4CTA A;  2NQR A;  4U91 A;  1UUY A;  1G8L A;  2NRS A;  4XCW A;  3IWT A;  3TCR A;  1O8Q A;  2FTS A;  2NQK A;  2PBQ A;  4NWO A;  2IS8 A;  2FU3 A;  3RFQ A;  3OI9 A;  5ERS A;  4CT8 A;  5ERT A;  3PZY A;  4LHB A;  2QQ1 A;  4UOC A;  2NRO A;  4UUW A;  1IHC A;  3K6A A; 
#chains in the Genus database with same CATH topology
 4PD0 A;  1T3E A;  1UUX A;  4TWG A;  2NQN A;  1Y5E A;  4UUX A;  4U90 A;  2F7Y A;  2NQS A;  2NQM A;  1DI7 A;  4U91 A;  2NRS A;  2NQK A;  2IS8 A;  3RFQ A;  2QQ1 A;  4UUW A;  2NQQ A;  2G2C A;  1JLJ A;  4TK3 A;  1O8O A;  4TK1 A;  1MKZ A;  3MCI A;  2F7W A;  2NQU A;  1UZ5 A;  1DI6 A;  3DQQ A;  5ERQ A;  1G8R A;  3KBQ A;  4PD1 A;  4CTA A;  1UUY A;  1O8Q A;  2PBQ A;  4NWO A;  4UOC A;  3K6A A;  5G2S A;  3MCH A;  4TK4 A;  5ERR A;  3MCJ A;  4XCW A;  5G2R A;  4CTA B;  1R2K A;  5ERV A;  1G8L A;  3TCR A;  3IWT A;  2FTS A;  2FU3 A;  5ERT A;  3PZY A;  4LHB A;  5DMH A;  1IHC A;  1XI8 A;  1WU2 A;  2NQV A;  5ERU A;  2NRP A;  2G4R A;  1O8N A;  1FC5 A;  4CT9 A;  1EAV A;  2NQR A;  3OI9 A;  4CT8 A;  2NRO A;  1YZY A;  5ERS A; 
#chains in the Genus database with same CATH homology
 2NQQ A;  4PD0 A;  1T3E A;  2G2C A;  1JLJ A;  5G2S A;  4TK3 A;  1O8O A;  1XI8 A;  3MCH A;  4TK4 A;  5ERR A;  4TK1 A;  1UUX A;  1WU2 A;  3MCJ A;  1MKZ A;  3MCI A;  4TWG A;  2F7W A;  1Y5E A;  2NQN A;  2NQU A;  2NQV A;  1UZ5 A;  2NRP A;  2G4R A;  1O8N A;  4UUX A;  1DI6 A;  5ERU A;  4U90 A;  1FC5 A;  2F7Y A;  2NQS A;  2NQM A;  5G2R A;  5ERQ A;  1G8R A;  3KBQ A;  4CTA B;  1R2K A;  4CT9 A;  4PD1 A;  5ERV A;  1EAV A;  1DI7 A;  4CTA A;  2NQR A;  4U91 A;  1UUY A;  1G8L A;  2NRS A;  4XCW A;  3IWT A;  3TCR A;  1O8Q A;  2FTS A;  2NQK A;  2PBQ A;  4NWO A;  2IS8 A;  2FU3 A;  3RFQ A;  3OI9 A;  5ERS A;  4CT8 A;  5ERT A;  3PZY A;  4LHB A;  2QQ1 A;  4UOC A;  2NRO A;  4UUW A;  1IHC A;  3K6A A; 
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