3KBQA

The crystal structure of the protein cina with unknown function from thermoplasma acidophilum
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
167
structure length
164
Chain Sequence
KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDIII
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The crystal structure of the protein CinA with unknown function from Thermoplasma acidophilum
rcsb
molecule tags Structural genomics, unknown function
source organism Thermoplasma acidophilum
molecule keywords Protein Ta0487
total genus 55
structure length 164
sequence length 167
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 3kbqA00
2FU3A 2NQMA 4TK3A 4TK4A 5ERQA 3K6AA 4XCWA 5ERVA 1G8RA 5ERTA 3KBQA 4TWGA 2F7YA 4UOCA 3MCIA 1UUYA 1EAVA 2NQVA 3MCHA 3MCJA 5G2SA 4CT9A 3RFQA 1R2KA 3PZYA 2G2CA 4U90A 1T3EA 1O8QA 1O8OA 1DI6A 1WU2A 1UUXA 2NRPA 2G4RA 2QQ1A 4UUXA 4CT8A 2NRSA 4LHBA 2NROA 5ERUA 3TCRA 4CTAB 1MKZA 2IS8A 2NQKA 3IWTA 1IHCA 4CTAA 1O8NA 2FTSA 1G8LA 2F7WA 3OI9A 4U91A 1UZ5A 2NQRA 4UUWA 1DI7A 4PD0A 1JLJA 2NQNA 4PD1A 1XI8A 2PBQA 2NQSA 2NQQA 5ERSA 4TK1A 5ERRA 1FC5A 2NQUA 5G2RA 1Y5EA 4NWOA
chains in the Genus database with same CATH superfamily
2NQMA 1G8RA 5ERTA 4UOCA 2NQVA 2G2CA 2NRSA 1YZYA 4UUWA 1DI7A 5DMHA 4PD1A 5G2RA 4TWGA 2NQRA 2FU3A 3K6AA 3MCIA 3MCJA 3MCHA 1R2KA 1O8QA 1O8OA 1DI6A 1WU2A 1UUXA 2NRPA 4CT8A 4LHBA 4CTAA 1XI8A 2NQUA 5ERQA 3PZYA 2NROA 1MKZA 2IS8A 1IHCA 1O8NA 2FTSA 3OI9A 4U91A 1UZ5A 4PD0A 2PBQA 2NQSA 2NQQA 5ERSA 4TK1A 5ERRA 3IWTA 3RFQA 1Y5EA 4TK3A 4TK4A 4XCWA 5ERVA 3KBQA 2F7YA 1UUYA 1EAVA 5G2SA 4CT9A 3DQQA 4U90A 1T3EA 4UUXA 2G4RA 2QQ1A 3TCRA 5ERUA 4CTAB 2NQKA 1G8LA 2F7WA 1JLJA 2NQNA 1FC5A 4NWOA
chains in the Genus database with same CATH topology
2FU3A 2NQMA 4TK3A 4TK4A 5ERQA 3K6AA 4XCWA 5ERVA 1G8RA 5ERTA 3KBQA 4TWGA 2F7YA 4UOCA 3MCIA 1UUYA 1EAVA 2NQVA 3MCHA 3MCJA 5G2SA 4CT9A 3RFQA 1R2KA 3PZYA 2G2CA 4U90A 1T3EA 1O8QA 1O8OA 1DI6A 1WU2A 1UUXA 2NRPA 2G4RA 2QQ1A 4UUXA 4CT8A 2NRSA 4LHBA 2NROA 5ERUA 3TCRA 4CTAB 1MKZA 2IS8A 2NQKA 3IWTA 1IHCA 4CTAA 1O8NA 2FTSA 1G8LA 2F7WA 3OI9A 4U91A 1UZ5A 2NQRA 4UUWA 1DI7A 4PD0A 1JLJA 2NQNA 4PD1A 1XI8A 2PBQA 2NQSA 2NQQA 5ERSA 4TK1A 5ERRA 1FC5A 2NQUA 5G2RA 1Y5EA 4NWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FU3 A;  2NQM A;  4TK3 A;  4TK4 A;  5ERQ A;  3K6A A;  4XCW A;  5ERV A;  1G8R A;  5ERT A;  3KBQ A;  4TWG A;  2F7Y A;  4UOC A;  3MCI A;  1UUY A;  1EAV A;  2NQV A;  3MCH A;  3MCJ A;  5G2S A;  4CT9 A;  3RFQ A;  1R2K A;  3PZY A;  2G2C A;  4U90 A;  1T3E A;  1O8Q A;  1O8O A;  1DI6 A;  1WU2 A;  1UUX A;  2NRP A;  2G4R A;  2QQ1 A;  4UUX A;  4CT8 A;  2NRS A;  4LHB A;  2NRO A;  5ERU A;  3TCR A;  4CTA B;  1MKZ A;  2IS8 A;  2NQK A;  3IWT A;  1IHC A;  4CTA A;  1O8N A;  2FTS A;  1G8L A;  2F7W A;  3OI9 A;  4U91 A;  1UZ5 A;  2NQR A;  4UUW A;  1DI7 A;  4PD0 A;  1JLJ A;  2NQN A;  4PD1 A;  1XI8 A;  2PBQ A;  2NQS A;  2NQQ A;  5ERS A;  4TK1 A;  5ERR A;  1FC5 A;  2NQU A;  5G2R A;  1Y5E A;  4NWO A; 
#chains in the Genus database with same CATH topology
 2NQM A;  1G8R A;  5ERT A;  4UOC A;  2NQV A;  2G2C A;  2NRS A;  1YZY A;  4UUW A;  1DI7 A;  5DMH A;  4PD1 A;  5G2R A;  4TWG A;  2NQR A;  2FU3 A;  3K6A A;  3MCI A;  3MCJ A;  3MCH A;  1R2K A;  1O8Q A;  1O8O A;  1DI6 A;  1WU2 A;  1UUX A;  2NRP A;  4CT8 A;  4LHB A;  4CTA A;  1XI8 A;  2NQU A;  5ERQ A;  3PZY A;  2NRO A;  1MKZ A;  2IS8 A;  1IHC A;  1O8N A;  2FTS A;  3OI9 A;  4U91 A;  1UZ5 A;  4PD0 A;  2PBQ A;  2NQS A;  2NQQ A;  5ERS A;  4TK1 A;  5ERR A;  3IWT A;  3RFQ A;  1Y5E A;  4TK3 A;  4TK4 A;  4XCW A;  5ERV A;  3KBQ A;  2F7Y A;  1UUY A;  1EAV A;  5G2S A;  4CT9 A;  3DQQ A;  4U90 A;  1T3E A;  4UUX A;  2G4R A;  2QQ1 A;  3TCR A;  5ERU A;  4CTA B;  2NQK A;  1G8L A;  2F7W A;  1JLJ A;  2NQN A;  1FC5 A;  4NWO A; 
#chains in the Genus database with same CATH homology
 2FU3 A;  2NQM A;  4TK3 A;  4TK4 A;  5ERQ A;  3K6A A;  4XCW A;  5ERV A;  1G8R A;  5ERT A;  3KBQ A;  4TWG A;  2F7Y A;  4UOC A;  3MCI A;  1UUY A;  1EAV A;  2NQV A;  3MCH A;  3MCJ A;  5G2S A;  4CT9 A;  3RFQ A;  1R2K A;  3PZY A;  2G2C A;  4U90 A;  1T3E A;  1O8Q A;  1O8O A;  1DI6 A;  1WU2 A;  1UUX A;  2NRP A;  2G4R A;  2QQ1 A;  4UUX A;  4CT8 A;  2NRS A;  4LHB A;  2NRO A;  5ERU A;  3TCR A;  4CTA B;  1MKZ A;  2IS8 A;  2NQK A;  3IWT A;  1IHC A;  4CTA A;  1O8N A;  2FTS A;  1G8L A;  2F7W A;  3OI9 A;  4U91 A;  1UZ5 A;  2NQR A;  4UUW A;  1DI7 A;  4PD0 A;  1JLJ A;  2NQN A;  4PD1 A;  1XI8 A;  2PBQ A;  2NQS A;  2NQQ A;  5ERS A;  4TK1 A;  5ERR A;  1FC5 A;  2NQU A;  5G2R A;  1Y5E A;  4NWO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...