1ZLI | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	74
structure length	74
Chain Sequence	NECVSKGFGCLPQSDCPQEARLSYGGCSTVCCDLSKLTGCKGKGGECNPLDRQCKELQAESASCGKGQKCCVWL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__7092755948269276__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__7092755948269276__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1ZLI/B/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__7092755948269276__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"7092755948269276","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1ZLI/B/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__7092755948269276__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5cfc8e552987dda4bf0c2b5a/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5cfc8e552987dda4bf0c2b5a/pdb.gz

FileManager.getAtomSetCollectionFromFile(/file/5cfc8e552987dda4bf0c2b5a/pdb.gz)

loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfc8e552987dda4bf0c2b5a/pdb.gz): 1148 ms

reading 74 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

74 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 15 ms

Adding embedded #jmolscript: select ({0:73});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Homo sapiens
publication title	The Three-Dimensional Structures of Tick Carboxypeptidase Inhibitor in Complex with A/B Carboxypeptidases Reveal a Novel Double-headed Binding Mode pubmed doi rcsb
molecule keywords	Carboxypeptidase B
total genus	18
structure length	74
sequence length	74
ec nomenclature
pdb deposition date	2005-05-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1zliB02
2.20.20.50	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1zliB01

1Z99A 2K2XA 1SHIA 2BDSA 2H9XA 4GV5A 1WQKA 3LMSB 2SH1A 1B8WA 3D4UB 1APFA 2MUBA 1SH1A 1D6BA 1AHLA 1ZUFA 1ZLHB 2MN3A 2RNGA 1ZLIB 1H5OA 1ZUEA 2JTOA 1WXNA 1BDSA 1ATXA
chains in the Genus database with same CATH superfamily

3C30A 1Z99A 2K2XA 1SHIA 2HJ9C 3MCXA 2BDSA 2H9XA 4GV5A 1GL9B 1WQKA 1ZHHB 3LMSB 2JR3A 2SH1A 1B8WA 3KEZA 1GKUB 2QSFA 3D4UB 1APFA 4YIRA 2HJEA 2MUBA 2QSHA 1SH1A 1D6BA 1AHLA 2QSGA 1ZUFA 2B9KA 2IKEA 1EL6A 1ZLHB 2MN3A 2RNGA 1ZLIB 3MYVA 1H5OA 1BDSA 1ZUEA 2IKDA 2JTOA 2XXLA 1WXNA 3IF4A 2DLAA 3C38A 1ATXA
chains in the Genus database with same CATH topology

3C30A 1Z99A 2K2XA 1SHIA 2HJ9C 3MCXA 2BDSA 2H9XA 4GV5A 1WQKA 1ZHHB 3LMSB 2JR3A 2SH1A 1B8WA 3KEZA 2QSFA 3D4UB 1APFA 4YIRA 2HJEA 2MUBA 2QSHA 1SH1A 1D6BA 1AHLA 2QSGA 1ZUFA 2B9KA 2IKEA 1ZLHB 2MN3A 2RNGA 1ZLIB 3MYVA 1H5OA 2IKDA 1ZUEA 1BDSA 2JTOA 2XXLA 1WXNA 2DLAA 3C38A 1ATXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1Z99 A;  2K2X A;  1SHI A;  2BDS A;  2H9X A;  4GV5 A;  1WQK A;  3LMS B;  2SH1 A;  1B8W A;  3D4U B;  1APF A;  2MUB A;  1SH1 A;  1D6B A;  1AHL A;  1ZUF A;  1ZLH B;  2MN3 A;  2RNG A;  1ZLI B;  1H5O A;  1ZUE A;  2JTO A;  1WXN A;  1BDS A;  1ATX A; 
#chains in the Genus database with same CATH topology
 3C30 A;  1Z99 A;  2K2X A;  1SHI A;  2HJ9 C;  3MCX A;  2BDS A;  2H9X A;  4GV5 A;  1GL9 B;  1WQK A;  1ZHH B;  3LMS B;  2JR3 A;  2SH1 A;  1B8W A;  3KEZ A;  1GKU B;  2QSF A;  3D4U B;  1APF A;  4YIR A;  2HJE A;  2MUB A;  2QSH A;  1SH1 A;  1D6B A;  1AHL A;  2QSG A;  1ZUF A;  2B9K A;  2IKE A;  1EL6 A;  1ZLH B;  2MN3 A;  2RNG A;  1ZLI B;  3MYV A;  1H5O A;  1BDS A;  1ZUE A;  2IKD A;  2JTO A;  2XXL A;  1WXN A;  3IF4 A;  2DLA A;  3C38 A;  1ATX A; 
#chains in the Genus database with same CATH homology
 3C30 A;  1Z99 A;  2K2X A;  1SHI A;  2HJ9 C;  3MCX A;  2BDS A;  2H9X A;  4GV5 A;  1WQK A;  1ZHH B;  3LMS B;  2JR3 A;  2SH1 A;  1B8W A;  3KEZ A;  2QSF A;  3D4U B;  1APF A;  4YIR A;  2HJE A;  2MUB A;  2QSH A;  1SH1 A;  1D6B A;  1AHL A;  2QSG A;  1ZUF A;  2B9K A;  2IKE A;  1ZLH B;  2MN3 A;  2RNG A;  1ZLI B;  3MYV A;  1H5O A;  2IKD A;  1ZUE A;  1BDS A;  2JTO A;  2XXL A;  1WXN A;  2DLA A;  3C38 A;  1ATX A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1ZLIB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN