1ZUF | Genus

Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	42
structure length	42
Chain Sequence	IMFFEMQACWSHSGVCRDKSERNCKPMAWTYCENRNQKCCEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 42 atoms

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42 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
publication title	D-amino acid residue in a defensin-like peptide from platypus venom: effect on structure and chromatographic properties. pubmed doi rcsb
molecule keywords	Defensin-like peptide 2/4
total genus	4
structure length	42
sequence length	42
ec nomenclature
pdb deposition date	2005-05-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08131	Defensin_3	Defensin-like peptide family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.10	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	1zufA00

2RNGA 1WQKA 1SH1A 1SHIA 1ZLIB 2K2XA 2JTOA 2BDSA 1WXNA 1ZUEA 1APFA 1ZUFA 1Z99A 1ZLHB 3D4UB 1BDSA 2MN3A 4GV5A 1H5OA 1AHLA 2MUBA 1D6BA 3LMSB 1ATXA 2SH1A 2H9XA 1B8WA
chains in the Genus database with same CATH superfamily

4YIRA 2RNGA 1WQKA 1SH1A 1SHIA 1ZLIB 2HJ9C 2B9KA 1EL6A 1GL9B 2K2XA 2JTOA 2QSFA 2BDSA 1ZHHB 3C30A 1GKUB 1WXNA 2DLAA 1ZUEA 1APFA 1ZUFA 1Z99A 1ZLHB 3D4UB 3KEZA 1BDSA 2MN3A 3C38A 3MCXA 4GV5A 1H5OA 1AHLA 3MYVA 2IKEA 2MUBA 2IKDA 1D6BA 3LMSB 3IF4A 2XXLA 1ATXA 2HJEA 2JR3A 2SH1A 2H9XA 1B8WA 2QSGA 2QSHA
chains in the Genus database with same CATH topology

4YIRA 2RNGA 1WQKA 1SH1A 1SHIA 1ZLIB 2HJ9C 2B9KA 2K2XA 2JTOA 2QSFA 2BDSA 1ZHHB 3C30A 1WXNA 2DLAA 1ZUEA 1APFA 1ZUFA 1Z99A 1ZLHB 3D4UB 3KEZA 1BDSA 2MN3A 3C38A 3MCXA 4GV5A 1H5OA 1AHLA 3MYVA 2IKEA 2MUBA 2IKDA 1D6BA 3LMSB 2XXLA 1ATXA 2HJEA 2JR3A 2SH1A 2H9XA 1B8WA 2QSGA 2QSHA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2RNG A;  1WQK A;  1SH1 A;  1SHI A;  1ZLI B;  2K2X A;  2JTO A;  2BDS A;  1WXN A;  1ZUE A;  1APF A;  1ZUF A;  1Z99 A;  1ZLH B;  3D4U B;  1BDS A;  2MN3 A;  4GV5 A;  1H5O A;  1AHL A;  2MUB A;  1D6B A;  3LMS B;  1ATX A;  2SH1 A;  2H9X A;  1B8W A; 
#chains in the Genus database with same CATH topology
 4YIR A;  2RNG A;  1WQK A;  1SH1 A;  1SHI A;  1ZLI B;  2HJ9 C;  2B9K A;  1EL6 A;  1GL9 B;  2K2X A;  2JTO A;  2QSF A;  2BDS A;  1ZHH B;  3C30 A;  1GKU B;  1WXN A;  2DLA A;  1ZUE A;  1APF A;  1ZUF A;  1Z99 A;  1ZLH B;  3D4U B;  3KEZ A;  1BDS A;  2MN3 A;  3C38 A;  3MCX A;  4GV5 A;  1H5O A;  1AHL A;  3MYV A;  2IKE A;  2MUB A;  2IKD A;  1D6B A;  3LMS B;  3IF4 A;  2XXL A;  1ATX A;  2HJE A;  2JR3 A;  2SH1 A;  2H9X A;  1B8W A;  2QSG A;  2QSH A; 
#chains in the Genus database with same CATH homology
 4YIR A;  2RNG A;  1WQK A;  1SH1 A;  1SHI A;  1ZLI B;  2HJ9 C;  2B9K A;  2K2X A;  2JTO A;  2QSF A;  2BDS A;  1ZHH B;  3C30 A;  1WXN A;  2DLA A;  1ZUE A;  1APF A;  1ZUF A;  1Z99 A;  1ZLH B;  3D4U B;  3KEZ A;  1BDS A;  2MN3 A;  3C38 A;  3MCX A;  4GV5 A;  1H5O A;  1AHL A;  3MYV A;  2IKE A;  2MUB A;  2IKD A;  1D6B A;  3LMS B;  2XXL A;  1ATX A;  2HJE A;  2JR3 A;  2SH1 A;  2H9X A;  1B8W A;  2QSG A;  2QSH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ZUFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations