1D2J | Genus

Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	3
sequence length	40
structure length	40
Chain Sequence	VATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGCVN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Signaling protein
source organism	Homo sapiens
publication title	Solution structure of the sixth LDL-A module of the LDL receptor. pubmed doi rcsb
molecule keywords	LOW-DENSITY LIPOPROTEIN RECEPTOR
total genus	3
structure length	40
sequence length	40
ec nomenclature
pdb deposition date	1999-09-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.400.10	Few Secondary Structures	Irregular	Low-density Lipoprotein Receptor	Low-density Lipoprotein Receptor	1d2jA00

1JRFA 1CR8A 1N7DA 1LDRA 1D2LA 1LDLA 1F5YA 2FYLB 2KNXA 2JM4A 2LGPA 2FYJA 2I1PA 2KNYA 1D2JA 2M0PA 1J8EA 2FCWB 2M96A 2M7PA 1K7BA 1XFEA
chains in the Genus database with same CATH superfamily

1JRFA 1CR8A 1N7DA 1LDRA 1D2LA 1LDLA 1F5YA 2FYLB 2KNXA 2JM4A 2LGPA 2FYJA 2I1PA 2KNYA 1D2JA 2M0PA 1J8EA 2FCWB 2M96A 2M7PA 1K7BA 1XFEA
chains in the Genus database with same CATH topology

1JRFA 1CR8A 1N7DA 1LDRA 1D2LA 1LDLA 1F5YA 2FYLB 2KNXA 2JM4A 2LGPA 2FYJA 2I1PA 2KNYA 1D2JA 2M0PA 1J8EA 2FCWB 2M96A 2M7PA 1K7BA 1XFEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1JRF A;  1CR8 A;  1N7D A;  1LDR A;  1D2L A;  1LDL A;  1F5Y A;  2FYL B;  2KNX A;  2JM4 A;  2LGP A;  2FYJ A;  2I1P A;  2KNY A;  1D2J A;  2M0P A;  1J8E A;  2FCW B;  2M96 A;  2M7P A;  1K7B A;  1XFE A; 
#chains in the Genus database with same CATH topology
 1JRF A;  1CR8 A;  1N7D A;  1LDR A;  1D2L A;  1LDL A;  1F5Y A;  2FYL B;  2KNX A;  2JM4 A;  2LGP A;  2FYJ A;  2I1P A;  2KNY A;  1D2J A;  2M0P A;  1J8E A;  2FCW B;  2M96 A;  2M7P A;  1K7B A;  1XFE A; 
#chains in the Genus database with same CATH homology
 1JRF A;  1CR8 A;  1N7D A;  1LDR A;  1D2L A;  1LDL A;  1F5Y A;  2FYL B;  2KNX A;  2JM4 A;  2LGP A;  2FYJ A;  2I1P A;  2KNY A;  1D2J A;  2M0P A;  1J8E A;  2FCW B;  2M96 A;  2M7P A;  1K7B A;  1XFE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1D2JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations