2B9K | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	47
structure length	47
Chain Sequence	AIKLVQSPNGNFAASFVLDGTKWIFKSKYYDSSKGYWVGIYEVWDRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 47 atoms

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47 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antibiotic
source organism	Bacillus subtilis
publication title	Solution structure of LCI, an AMP from Bacillus subtilis rcsb
molecule keywords	Antimicrobial peptide LCI
total genus	7
structure length	47
sequence length	47
ec nomenclature
pdb deposition date	2005-10-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12197	lci	Bacillus cereus group antimicrobial protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.20.70	Mainly Beta	Single Sheet	Anthopleurin-A	Anthopleurin-A	2b9kA00

2B9KA
chains in the Genus database with same CATH superfamily

2IKDA 4YIRA 1WQKA 1SHIA 1AHLA 4GV5A 1ZUFA 1Z99A 2QSHA 1GKUB 2HJEA 2DLAA 1ZLIB 2JTOA 1EL6A 2QSFA 2RNGA 1ZLHB 2SH1A 3C38A 2QSGA 2MN3A 1B8WA 2BDSA 1ATXA 2H9XA 3MYVA 2B9KA 1D6BA 3C30A 1H5OA 2JR3A 2XXLA 2MUBA 1BDSA 3D4UB 3KEZA 3LMSB 3MCXA 2IKEA 1ZHHB 3IF4A 1GL9B 1APFA 1SH1A 1ZUEA 1WXNA 2K2XA 2HJ9C
chains in the Genus database with same CATH topology

2IKDA 4YIRA 1WQKA 1SHIA 1AHLA 4GV5A 1ZUFA 1Z99A 2QSHA 2HJEA 2DLAA 1ZLIB 2JTOA 2QSFA 2RNGA 1ZLHB 2SH1A 3C38A 2QSGA 2MN3A 1B8WA 2BDSA 1ATXA 2H9XA 3MYVA 2B9KA 1D6BA 3C30A 1H5OA 2JR3A 2XXLA 2MUBA 1BDSA 3D4UB 3KEZA 3LMSB 3MCXA 2IKEA 1ZHHB 1APFA 1SH1A 1ZUEA 1WXNA 2K2XA 2HJ9C
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2B9K A; 
#chains in the Genus database with same CATH topology
 2IKD A;  4YIR A;  1WQK A;  1SHI A;  1AHL A;  4GV5 A;  1ZUF A;  1Z99 A;  2QSH A;  1GKU B;  2HJE A;  2DLA A;  1ZLI B;  2JTO A;  1EL6 A;  2QSF A;  2RNG A;  1ZLH B;  2SH1 A;  3C38 A;  2QSG A;  2MN3 A;  1B8W A;  2BDS A;  1ATX A;  2H9X A;  3MYV A;  2B9K A;  1D6B A;  3C30 A;  1H5O A;  2JR3 A;  2XXL A;  2MUB A;  1BDS A;  3D4U B;  3KEZ A;  3LMS B;  3MCX A;  2IKE A;  1ZHH B;  3IF4 A;  1GL9 B;  1APF A;  1SH1 A;  1ZUE A;  1WXN A;  2K2X A;  2HJ9 C; 
#chains in the Genus database with same CATH homology
 2IKD A;  4YIR A;  1WQK A;  1SHI A;  1AHL A;  4GV5 A;  1ZUF A;  1Z99 A;  2QSH A;  2HJE A;  2DLA A;  1ZLI B;  2JTO A;  2QSF A;  2RNG A;  1ZLH B;  2SH1 A;  3C38 A;  2QSG A;  2MN3 A;  1B8W A;  2BDS A;  1ATX A;  2H9X A;  3MYV A;  2B9K A;  1D6B A;  3C30 A;  1H5O A;  2JR3 A;  2XXL A;  2MUB A;  1BDS A;  3D4U B;  3KEZ A;  3LMS B;  3MCX A;  2IKE A;  1ZHH B;  1APF A;  1SH1 A;  1ZUE A;  1WXN A;  2K2X A;  2HJ9 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2B9KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations