2B9KA

Solution structure of lci, an amp from bacillus subtilis
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
47
structure length
47
Chain Sequence
AIKLVQSPNGNFAASFVLDGTKWIFKSKYYDSSKGYWVGIYEVWDRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (36-42)S1 (3-7)S3 (21-31)TI1 (7-10)O1 (13-15)S2 (15-18)TIV1 (17-20)TI2 (31-34)TI3 (32-35)TIV2 (41-44)Updating...
connected with : NaN
publication title Solution structure of LCI, an AMP from Bacillus subtilis
rcsb
molecule tags Antibiotic
source organism Bacillus subtilis
molecule keywords Antimicrobial peptide LCI
total genus 7
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2005-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12197 lci Bacillus cereus group antimicrobial protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.70 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 2b9kA00
2B9KA
chains in the Genus database with same CATH superfamily
2JR3A 3KEZA 2JTOA 1ZUEA 1WQKA 2QSFA 1APFA 1Z99A 2IKDA 2HJ9C 2K2XA 1EL6A 2B9KA 2QSHA 2RNGA 2QSGA 1WXNA 1ZUFA 2MUBA 3MCXA 3D4UB 2HJEA 2IKEA 2H9XA 1BDSA 3LMSB 3MYVA 2SH1A 3IF4A 1ZHHB 1ATXA 1ZLIB 1GKUB 4GV5A 1H5OA 1B8WA 1D6BA 3C38A 3C30A 2XXLA 1ZLHB 2MN3A 1SH1A 1SHIA 2DLAA 4YIRA 2BDSA 1GL9B 1AHLA
chains in the Genus database with same CATH topology
2JR3A 3KEZA 2JTOA 1ZUEA 1WQKA 2QSFA 1APFA 1Z99A 2IKDA 2HJ9C 2K2XA 2B9KA 2QSHA 2RNGA 2QSGA 1WXNA 1ZUFA 2MUBA 3MCXA 3D4UB 2HJEA 2IKEA 2H9XA 1BDSA 3LMSB 3MYVA 2SH1A 1ATXA 1ZHHB 1ZLIB 4GV5A 1H5OA 1B8WA 1D6BA 3C38A 3C30A 2XXLA 1ZLHB 2MN3A 1SH1A 1SHIA 2DLAA 4YIRA 2BDSA 1AHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B9K A; 
#chains in the Genus database with same CATH topology
 2JR3 A;  3KEZ A;  2JTO A;  1ZUE A;  1WQK A;  2QSF A;  1APF A;  1Z99 A;  2IKD A;  2HJ9 C;  2K2X A;  1EL6 A;  2B9K A;  2QSH A;  2RNG A;  2QSG A;  1WXN A;  1ZUF A;  2MUB A;  3MCX A;  3D4U B;  2HJE A;  2IKE A;  2H9X A;  1BDS A;  3LMS B;  3MYV A;  2SH1 A;  3IF4 A;  1ZHH B;  1ATX A;  1ZLI B;  1GKU B;  4GV5 A;  1H5O A;  1B8W A;  1D6B A;  3C38 A;  3C30 A;  2XXL A;  1ZLH B;  2MN3 A;  1SH1 A;  1SHI A;  2DLA A;  4YIR A;  2BDS A;  1GL9 B;  1AHL A; 
#chains in the Genus database with same CATH homology
 2JR3 A;  3KEZ A;  2JTO A;  1ZUE A;  1WQK A;  2QSF A;  1APF A;  1Z99 A;  2IKD A;  2HJ9 C;  2K2X A;  2B9K A;  2QSH A;  2RNG A;  2QSG A;  1WXN A;  1ZUF A;  2MUB A;  3MCX A;  3D4U B;  2HJE A;  2IKE A;  2H9X A;  1BDS A;  3LMS B;  3MYV A;  2SH1 A;  1ATX A;  1ZHH B;  1ZLI B;  4GV5 A;  1H5O A;  1B8W A;  1D6B A;  3C38 A;  3C30 A;  2XXL A;  1ZLH B;  2MN3 A;  1SH1 A;  1SHI A;  2DLA A;  4YIR A;  2BDS A;  1AHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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