2I5RA

Structure of small toprim domain-containing protein from b. stearothermophilus in complex with mg2+
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
115
structure length
115
Chain Sequence
AMRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Geobacillus stearothermophilus
molecule keywords Toprim domain-containing protein
total genus 42
structure length 115
sequence length 115
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01751 Toprim Toprim domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1360.20 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Toprim domain 2i5rA00
2FCJA 2I5RA
chains in the Genus database with same CATH superfamily
3VDPA 2I5RA 1EQNA 2V1CA 4EDGA 2FCJA 4E2KA 3VDUA 2ZBKA 3B39A 1D3YA 2Q2EA 4EDTA 4O6OA 4EDVA 1VDDA 2AU3A 4EDKA 4EE1A 3VE5A 1DD9A 1DDEA 4O6PB 4EDRA 1T6T1 4JCVA 5GUJA
chains in the Genus database with same CATH topology
2FCJA 2I5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FCJ A;  2I5R A; 
#chains in the Genus database with same CATH topology
 3VDP A;  2I5R A;  1EQN A;  2V1C A;  4EDG A;  2FCJ A;  4E2K A;  3VDU A;  2ZBK A;  3B39 A;  1D3Y A;  2Q2E A;  4EDT A;  4O6O A;  4EDV A;  1VDD A;  2AU3 A;  4EDK A;  4EE1 A;  3VE5 A;  1DD9 A;  1DDE A;  4O6P B;  4EDR A;  1T6T 1;  4JCV A;  5GUJ A; 
#chains in the Genus database with same CATH homology
 2FCJ A;  2I5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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