The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
197
|
structure length |
197
|
Chain Sequence |
YYSTSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYGKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and functional characterization of Cys4 zinc finger motif in the recombination mediator protein RecR
doi rcsb |
| molecule tags |
Recombination
|
| source organism |
Thermoanaerobacter tengcongensis
|
| molecule keywords |
Recombination protein RecR
|
| total genus |
54
|
| structure length |
197
|
| sequence length |
197
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2013-12-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00633 | HHH | Helix-hairpin-helix motif |
| A | PF02132 | RecR | RecR protein |
| A | PF13662 | Toprim_4 | Toprim domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 | Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 |
#chains in the Genus database with same CATH superfamily 1D3Y A; 4EDV A; 2V1C A; 2ZBK A; 1T6T 1; 1DDE A; 4EDR A; 5GUJ A; 3VE5 A; 4EDK A; 4O6P B; 4O6O A; 3VDP A; 1DD9 A; 1VDD A; 4JCV A; 2AU3 A; 4EDT A; 4E2K A; 1EQN A; 3B39 A; 2Q2E A; 4EDG A; 4EE1 A; 3VDU A; #chains in the Genus database with same CATH topology 1D3Y A; 4EDV A; 2I5R A; 2V1C A; 2ZBK A; 1T6T 1; 2FCJ A; 1DDE A; 4EDR A; 5GUJ A; 3VE5 A; 4EDK A; 4O6P B; 4O6O A; 3VDP A; 1DD9 A; 1VDD A; 4JCV A; 2AU3 A; 4EDT A; 4E2K A; 1EQN A; 3B39 A; 2Q2E A; 4EDG A; 4EE1 A; 3VDU A; #chains in the Genus database with same CATH homology 1D3Y A; 4EDV A; 2V1C A; 2ZBK A; 1T6T 1; 1DDE A; 4EDR A; 5GUJ A; 3VE5 A; 4EDK A; 4O6P B; 4O6O A; 3VDP A; 1DD9 A; 1VDD A; 4JCV A; 2AU3 A; 4EDT A; 4E2K A; 1EQN A; 3B39 A; 2Q2E A; 4EDG A; 4EE1 A; 3VDU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
