2IUM | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	211
structure length	211
Chain Sequence	PEVATYHCGDNLLESYDIFASLPNTNAAKVAAYCRLAAAGGVVSGTIQVTSYAGRWPKVGNSVTDGIKFAIVVSPPMDKDPRSNLSQWLGATVFPAGATTALFSPNPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASGELVVAAAKSPVQTTKYELIYLGFTLKQNSSGTNFFDPNASSDLSFLTPPIPFTYLGYYQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Avian adenovirus gal1
publication title	Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber. pubmed doi rcsb
molecule keywords	AVIAN ADENOVIRUS CELO LONG FIBRE
total genus	49
structure length	211
sequence length	211
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2006-06-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16812	AdHead_fibreRBD	C-terminal head domain of the fowl adenovirus type 1 long fibre

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	2iumA00

2IUNA 2IUMA 2VTWA
chains in the Genus database with same CATH superfamily

4LIYA 1KACA 4XQBA 4K6VA 4GU3A 4K6TA 1UXEA 4D63A 2WGTA 2BT8A 4ODBA 4ATZA 3BQ4A 1QHVA 2OJ5A 1P6AA 1NOBA 2OJ6A 1KKEA 2IUNA 3L89A 3QNDA 4D62A 5MHSA 2J12A 3F0YA 4GU4A 4XL8A 4WYJA 4XQAA 3ZPEA 2WGUA 2W9LC 2VTWA 3L88A 1UXBA 2JJLA 2VRSA 3ZPFA 4ZDGA 2J2JA 4CW8A 3EOYA 1KNBA 3EXWA 3S6XA 2BZUA 2BZVA 2O39A 1P69A 3N0IA 3CNCA 2BSFA 4XC5A 2BT7A 4K6UA 2IUMA 2WBWA 2J1KC 3EXVA 1UXAA 4K6WA 2QLKA 1H7ZA 3O8EA 2WBVA 1QIUA 2WSTA
chains in the Genus database with same CATH topology

2JJLA 2IUNA 2VRSA 4CW8A 4D62A 2BT7A 2IUMA 3ZPEA 4D63A 2BT8A 2BSFA 2VTWA 3ZPFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IUN A;  2IUM A;  2VTW A; 
#chains in the Genus database with same CATH topology
 4LIY A;  1KAC A;  4XQB A;  4K6V A;  4GU3 A;  4K6T A;  1UXE A;  4D63 A;  2WGT A;  2BT8 A;  4ODB A;  4ATZ A;  3BQ4 A;  1QHV A;  2OJ5 A;  1P6A A;  1NOB A;  2OJ6 A;  1KKE A;  2IUN A;  3L89 A;  3QND A;  4D62 A;  5MHS A;  2J12 A;  3F0Y A;  4GU4 A;  4XL8 A;  4WYJ A;  4XQA A;  3ZPE A;  2WGU A;  2W9L C;  2VTW A;  3L88 A;  1UXB A;  2JJL A;  2VRS A;  3ZPF A;  4ZDG A;  2J2J A;  4CW8 A;  3EOY A;  1KNB A;  3EXW A;  3S6X A;  2BZU A;  2BZV A;  2O39 A;  1P69 A;  3N0I A;  3CNC A;  2BSF A;  4XC5 A;  2BT7 A;  4K6U A;  2IUM A;  2WBW A;  2J1K C;  3EXV A;  1UXA A;  4K6W A;  2QLK A;  1H7Z A;  3O8E A;  2WBV A;  1QIU A;  2WST A; 
#chains in the Genus database with same CATH homology
 2JJL A;  2IUN A;  2VRS A;  4CW8 A;  4D62 A;  2BT7 A;  2IUM A;  3ZPE A;  4D63 A;  2BT8 A;  2BSF A;  2VTW A;  3ZPF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2IUMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations