2IUN | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	211
structure length	211
Chain Sequence	PEVATYHCGDNLLESYDIFASLPNTNAAKVAAYCRLAAAGGVVSGTIQVTSYAGRWPKVGNSVTDGIKFAIVVSPPMDKDPRSNLSQWLGATVFPAGATTALFSPNPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASGELVVAAAKSPVQTTKYELIYLGFTLKQNSSGTNFFDPNASSDLSFLTPPIPFTYLGYYQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 211 atoms

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211 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Avian adenovirus gal1
publication title	Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber. pubmed doi rcsb
molecule keywords	AVIAN ADENOVIRUS CELO LONG FIBRE
total genus	45
structure length	211
sequence length	211
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2006-06-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16812	AdHead_fibreRBD	C-terminal head domain of the fowl adenovirus type 1 long fibre

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	2iunA00

2VTWA 2IUNA 2IUMA
chains in the Genus database with same CATH superfamily

3ZPEA 3ZPFA 4K6VA 1KACA 4LIYA 1UXAA 3EOYA 3F0YA 4CW8A 1KNBA 3O8EA 2JJLA 3QNDA 2WBVA 2OJ5A 4K6WA 4XC5A 4XQAA 4K6TA 2BT8A 2W9LC 4D63A 1NOBA 2WSTA 2BZVA 3L88A 4ATZA 4XQBA 2IUMA 1P6AA 1QHVA 2O39A 5MHSA 2J2JA 2BT7A 2WBWA 2WGTA 4K6UA 2BSFA 2VTWA 3N0IA 4ZDGA 2WGUA 4GU3A 1QIUA 2IUNA 2BZUA 3EXWA 3CNCA 3BQ4A 1H7ZA 2OJ6A 1KKEA 4XL8A 3S6XA 3EXVA 4WYJA 3L89A 2J12A 2J1KC 2QLKA 4D62A 1UXEA 4GU4A 2VRSA 1P69A 1UXBA 4ODBA
chains in the Genus database with same CATH topology

3ZPEA 2BT7A 3ZPFA 2BT8A 2BSFA 2VTWA 4D63A 4CW8A 4D62A 2IUNA 2IUMA 2VRSA 2JJLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VTW A;  2IUN A;  2IUM A; 
#chains in the Genus database with same CATH topology
 3ZPE A;  3ZPF A;  4K6V A;  1KAC A;  4LIY A;  1UXA A;  3EOY A;  3F0Y A;  4CW8 A;  1KNB A;  3O8E A;  2JJL A;  3QND A;  2WBV A;  2OJ5 A;  4K6W A;  4XC5 A;  4XQA A;  4K6T A;  2BT8 A;  2W9L C;  4D63 A;  1NOB A;  2WST A;  2BZV A;  3L88 A;  4ATZ A;  4XQB A;  2IUM A;  1P6A A;  1QHV A;  2O39 A;  5MHS A;  2J2J A;  2BT7 A;  2WBW A;  2WGT A;  4K6U A;  2BSF A;  2VTW A;  3N0I A;  4ZDG A;  2WGU A;  4GU3 A;  1QIU A;  2IUN A;  2BZU A;  3EXW A;  3CNC A;  3BQ4 A;  1H7Z A;  2OJ6 A;  1KKE A;  4XL8 A;  3S6X A;  3EXV A;  4WYJ A;  3L89 A;  2J12 A;  2J1K C;  2QLK A;  4D62 A;  1UXE A;  4GU4 A;  2VRS A;  1P69 A;  1UXB A;  4ODB A; 
#chains in the Genus database with same CATH homology
 3ZPE A;  2BT7 A;  3ZPF A;  2BT8 A;  2BSF A;  2VTW A;  4D63 A;  4CW8 A;  4D62 A;  2IUN A;  2IUM A;  2VRS A;  2JJL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2IUNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations