2OJ5 | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	162
structure length	162
Chain Sequence	PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Reovirus sp.
publication title	The Reovirus Sigma1 Aspartic Acid Sandwich: A TRIMERIZATION MOTIF POISED FOR CONFORMATIONAL CHANGE. pubmed doi rcsb
molecule keywords	Viral attachment protein sigma 1
total genus	32
structure length	162
sequence length	162
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2007-01-12

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	2oj5A00

3S6XA 3EOYA 4ODBA 4GU3A 1KKEA 5MHSA 4GU4A 2OJ5A 4XC5A 2OJ6A
chains in the Genus database with same CATH superfamily

1P69A 2BZVA 4ODBA 4GU3A 3ZPFA 3F0YA 2BZUA 4K6VA 2O39A 3EXVA 4D62A 2J2JA 4ATZA 2J1KC 3QNDA 1QIUA 3L89A 3S6XA 3ZPEA 2IUMA 2WBVA 1NOBA 4K6WA 3BQ4A 4GU4A 2OJ5A 4K6TA 3EXWA 2WBWA 1P6AA 3O8EA 2VTWA 1H7ZA 4CW8A 2BT7A 2BSFA 2WSTA 4LIYA 1KKEA 1UXAA 2J12A 2WGUA 4XQAA 3L88A 5MHSA 2W9LC 4XL8A 4WYJA 4D63A 2IUNA 1UXEA 2QLKA 3CNCA 4XC5A 1QHVA 1UXBA 3N0IA 3EOYA 4XQBA 2BT8A 2VRSA 1KNBA 1KACA 2WGTA 2JJLA 2OJ6A 4ZDGA 4K6UA
chains in the Genus database with same CATH topology

3S6XA 3EOYA 4ODBA 4GU3A 1KKEA 5MHSA 4GU4A 2OJ5A 4XC5A 2OJ6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3S6X A;  3EOY A;  4ODB A;  4GU3 A;  1KKE A;  5MHS A;  4GU4 A;  2OJ5 A;  4XC5 A;  2OJ6 A; 
#chains in the Genus database with same CATH topology
 1P69 A;  2BZV A;  4ODB A;  4GU3 A;  3ZPF A;  3F0Y A;  2BZU A;  4K6V A;  2O39 A;  3EXV A;  4D62 A;  2J2J A;  4ATZ A;  2J1K C;  3QND A;  1QIU A;  3L89 A;  3S6X A;  3ZPE A;  2IUM A;  2WBV A;  1NOB A;  4K6W A;  3BQ4 A;  4GU4 A;  2OJ5 A;  4K6T A;  3EXW A;  2WBW A;  1P6A A;  3O8E A;  2VTW A;  1H7Z A;  4CW8 A;  2BT7 A;  2BSF A;  2WST A;  4LIY A;  1KKE A;  1UXA A;  2J12 A;  2WGU A;  4XQA A;  3L88 A;  5MHS A;  2W9L C;  4XL8 A;  4WYJ A;  4D63 A;  2IUN A;  1UXE A;  2QLK A;  3CNC A;  4XC5 A;  1QHV A;  1UXB A;  3N0I A;  3EOY A;  4XQB A;  2BT8 A;  2VRS A;  1KNB A;  1KAC A;  2WGT A;  2JJL A;  2OJ6 A;  4ZDG A;  4K6U A; 
#chains in the Genus database with same CATH homology
 3S6X A;  3EOY A;  4ODB A;  4GU3 A;  1KKE A;  5MHS A;  4GU4 A;  2OJ5 A;  4XC5 A;  2OJ6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2OJ5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization