2PBQA

Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus vf5
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
174
structure length
174
Chain Sequence
KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDLIGGAYIDTDPNKVKAFRPKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5
rcsb
molecule tags Lyase
source organism Aquifex aeolicus
molecule keywords Molybdenum cofactor biosynthesis MOG
total genus 58
structure length 174
sequence length 174
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 2pbqA00
1R2KA 4UOCA 2FU3A 2NRPA 1JLJA 3KBQA 1UZ5A 5G2RA 2G2CA 4U90A 5ERQA 5ERSA 2NQMA 1Y5EA 3OI9A 3MCIA 4U91A 3IWTA 1T3EA 4XCWA 3PZYA 2NQUA 1MKZA 5ERUA 1O8NA 3MCHA 4CT8A 4TK4A 4CTAA 3RFQA 1G8LA 1IHCA 4PD0A 1EAVA 4UUWA 3TCRA 4LHBA 4NWOA 2NROA 2NQVA 4TK1A 1FC5A 1O8OA 2FTSA 1WU2A 2NQNA 2QQ1A 1UUXA 3MCJA 1O8QA 4TWGA 1DI7A 4CT9A 5ERTA 2PBQA 2G4RA 1G8RA 2NQKA 4CTAB 1XI8A 5ERVA 1DI6A 2NQRA 2NQQA 5G2SA 2IS8A 3K6AA 1UUYA 2F7WA 2NRSA 4TK3A 4UUXA 5ERRA 2NQSA 4PD1A 2F7YA
chains in the Genus database with same CATH superfamily
2FU3A 1Y5EA 3OI9A 3MCHA 4CT8A 4CTAA 4LHBA 4TK1A 1UUXA 1O8QA 5ERTA 1G8RA 1XI8A 5G2SA 1UUYA 2F7WA 1R2KA 3MCIA 3IWTA 1T3EA 4UUWA 3TCRA 4NWOA 2NQVA 2FTSA 2PBQA 2G4RA 5ERVA 2IS8A 3K6AA 2NRSA 4UUXA 2NQSA 2NRPA 1UZ5A 5G2RA 4U90A 2NQMA 1YZYA 4XCWA 1MKZA 4TK4A 3RFQA 1IHCA 1EAVA 2NROA 1FC5A 1O8OA 1WU2A 2NQNA 2QQ1A 4CT9A 1DI7A 2NQKA 1DI6A 2NQQA 5ERRA 5DMHA 4PD1A 2F7YA 4UOCA 1JLJA 3KBQA 2G2CA 5ERQA 5ERSA 4U91A 3PZYA 2NQUA 5ERUA 1O8NA 1G8LA 4PD0A 3MCJA 4TWGA 4CTAB 2NQRA 4TK3A 3DQQA
chains in the Genus database with same CATH topology
1R2KA 4UOCA 2FU3A 2NRPA 1JLJA 3KBQA 1UZ5A 5G2RA 2G2CA 4U90A 5ERQA 5ERSA 2NQMA 1Y5EA 3OI9A 3MCIA 4U91A 3IWTA 1T3EA 4XCWA 3PZYA 2NQUA 1MKZA 5ERUA 1O8NA 3MCHA 4CT8A 4TK4A 4CTAA 3RFQA 1G8LA 1IHCA 4PD0A 1EAVA 4UUWA 3TCRA 4LHBA 4NWOA 2NROA 2NQVA 4TK1A 1FC5A 1O8OA 2FTSA 1WU2A 2NQNA 2QQ1A 1UUXA 3MCJA 1O8QA 4TWGA 1DI7A 4CT9A 5ERTA 2PBQA 2G4RA 1G8RA 2NQKA 4CTAB 1XI8A 5ERVA 1DI6A 2NQRA 2NQQA 5G2SA 2IS8A 3K6AA 1UUYA 2F7WA 2NRSA 4TK3A 4UUXA 5ERRA 2NQSA 4PD1A 2F7YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R2K A;  4UOC A;  2FU3 A;  2NRP A;  1JLJ A;  3KBQ A;  1UZ5 A;  5G2R A;  2G2C A;  4U90 A;  5ERQ A;  5ERS A;  2NQM A;  1Y5E A;  3OI9 A;  3MCI A;  4U91 A;  3IWT A;  1T3E A;  4XCW A;  3PZY A;  2NQU A;  1MKZ A;  5ERU A;  1O8N A;  3MCH A;  4CT8 A;  4TK4 A;  4CTA A;  3RFQ A;  1G8L A;  1IHC A;  4PD0 A;  1EAV A;  4UUW A;  3TCR A;  4LHB A;  4NWO A;  2NRO A;  2NQV A;  4TK1 A;  1FC5 A;  1O8O A;  2FTS A;  1WU2 A;  2NQN A;  2QQ1 A;  1UUX A;  3MCJ A;  1O8Q A;  4TWG A;  1DI7 A;  4CT9 A;  5ERT A;  2PBQ A;  2G4R A;  1G8R A;  2NQK A;  4CTA B;  1XI8 A;  5ERV A;  1DI6 A;  2NQR A;  2NQQ A;  5G2S A;  2IS8 A;  3K6A A;  1UUY A;  2F7W A;  2NRS A;  4TK3 A;  4UUX A;  5ERR A;  2NQS A;  4PD1 A;  2F7Y A; 
#chains in the Genus database with same CATH topology
 2FU3 A;  1Y5E A;  3OI9 A;  3MCH A;  4CT8 A;  4CTA A;  4LHB A;  4TK1 A;  1UUX A;  1O8Q A;  5ERT A;  1G8R A;  1XI8 A;  5G2S A;  1UUY A;  2F7W A;  1R2K A;  3MCI A;  3IWT A;  1T3E A;  4UUW A;  3TCR A;  4NWO A;  2NQV A;  2FTS A;  2PBQ A;  2G4R A;  5ERV A;  2IS8 A;  3K6A A;  2NRS A;  4UUX A;  2NQS A;  2NRP A;  1UZ5 A;  5G2R A;  4U90 A;  2NQM A;  1YZY A;  4XCW A;  1MKZ A;  4TK4 A;  3RFQ A;  1IHC A;  1EAV A;  2NRO A;  1FC5 A;  1O8O A;  1WU2 A;  2NQN A;  2QQ1 A;  4CT9 A;  1DI7 A;  2NQK A;  1DI6 A;  2NQQ A;  5ERR A;  5DMH A;  4PD1 A;  2F7Y A;  4UOC A;  1JLJ A;  3KBQ A;  2G2C A;  5ERQ A;  5ERS A;  4U91 A;  3PZY A;  2NQU A;  5ERU A;  1O8N A;  1G8L A;  4PD0 A;  3MCJ A;  4TWG A;  4CTA B;  2NQR A;  4TK3 A;  3DQQ A; 
#chains in the Genus database with same CATH homology
 1R2K A;  4UOC A;  2FU3 A;  2NRP A;  1JLJ A;  3KBQ A;  1UZ5 A;  5G2R A;  2G2C A;  4U90 A;  5ERQ A;  5ERS A;  2NQM A;  1Y5E A;  3OI9 A;  3MCI A;  4U91 A;  3IWT A;  1T3E A;  4XCW A;  3PZY A;  2NQU A;  1MKZ A;  5ERU A;  1O8N A;  3MCH A;  4CT8 A;  4TK4 A;  4CTA A;  3RFQ A;  1G8L A;  1IHC A;  4PD0 A;  1EAV A;  4UUW A;  3TCR A;  4LHB A;  4NWO A;  2NRO A;  2NQV A;  4TK1 A;  1FC5 A;  1O8O A;  2FTS A;  1WU2 A;  2NQN A;  2QQ1 A;  1UUX A;  3MCJ A;  1O8Q A;  4TWG A;  1DI7 A;  4CT9 A;  5ERT A;  2PBQ A;  2G4R A;  1G8R A;  2NQK A;  4CTA B;  1XI8 A;  5ERV A;  1DI6 A;  2NQR A;  2NQQ A;  5G2S A;  2IS8 A;  3K6A A;  1UUY A;  2F7W A;  2NRS A;  4TK3 A;  4UUX A;  5ERR A;  2NQS A;  4PD1 A;  2F7Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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