2QK7B

A covalent s-f heterodimer of staphylococcal gamma-hemolysin
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
297
structure length
287
Chain Sequence
KITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKAAGNINSGYEKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLTAFSETINYKQESYRTTLSRCTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A covalent S-F heterodimer of leucotoxin reveals molecular plasticity of beta-barrel pore-forming toxins.
pubmed doi rcsb
molecule tags Toxin
source organism Staphylococcus aureus subsp. aureus
molecule keywords Gamma-hemolysin component A
total genus 73
structure length 287
sequence length 297
ec nomenclature
pdb deposition date 2007-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 2qk7B00
2YGTA 4IDJA 1LKFA 4P24A 4YHDA 3ROHA 4P1XB 3O44A 1T5RA 4P1YB 3M3RA 3B07B 5K59A 3M4DA 1PVLA 4Q7GA 2QK7B 4IYCA 4IYTA 4J0OA 4P1XA 4TW1B 5K59C 4P1YA 3M4EA 7AHLA 3B07A 2QK7A 4U6VA 3ANZA 4H56A 4IYAA 3LKFA 4TW1A 2LKFA 4I0NA 3M2LA 4IZLA
chains in the Genus database with same CATH superfamily
2YGTA 4IDJA 1LKFA 4P24A 4YHDA 3ROHA 4P1XB 3O44A 1T5RA 4P1YB 3M3RA 3B07B 5K59A 3M4DA 1PVLA 4Q7GA 2QK7B 4IYCA 4IYTA 4J0OA 4P1XA 4TW1B 5K59C 4P1YA 3M4EA 7AHLA 1XEZA 3B07A 2QK7A 4U6VA 3ANZA 4H56A 4IYAA 3LKFA 4TW1A 2LKFA 4I0NA 3M2LA 4IZLA
chains in the Genus database with same CATH topology
2YGTA 4IDJA 1LKFA 4P24A 4YHDA 3ROHA 4P1XB 3O44A 1T5RA 4P1YB 3M3RA 3B07B 5K59A 3M4DA 1PVLA 4Q7GA 2QK7B 4IYCA 4IYTA 4J0OA 4P1XA 4TW1B 5K59C 4P1YA 3M4EA 7AHLA 3B07A 2QK7A 4U6VA 3ANZA 4H56A 4IYAA 3LKFA 4TW1A 2LKFA 4I0NA 3M2LA 4IZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YGT A;  4IDJ A;  1LKF A;  4P24 A;  4YHD A;  3ROH A;  4P1X B;  3O44 A;  1T5R A;  4P1Y B;  3M3R A;  3B07 B;  5K59 A;  3M4D A;  1PVL A;  4Q7G A;  2QK7 B;  4IYC A;  4IYT A;  4J0O A;  4P1X A;  4TW1 B;  5K59 C;  4P1Y A;  3M4E A;  7AHL A;  3B07 A;  2QK7 A;  4U6V A;  3ANZ A;  4H56 A;  4IYA A;  3LKF A;  4TW1 A;  2LKF A;  4I0N A;  3M2L A;  4IZL A; 
#chains in the Genus database with same CATH topology
 2YGT A;  4IDJ A;  1LKF A;  4P24 A;  4YHD A;  3ROH A;  4P1X B;  3O44 A;  1T5R A;  4P1Y B;  3M3R A;  3B07 B;  5K59 A;  3M4D A;  1PVL A;  4Q7G A;  2QK7 B;  4IYC A;  4IYT A;  4J0O A;  4P1X A;  4TW1 B;  5K59 C;  4P1Y A;  3M4E A;  7AHL A;  1XEZ A;  3B07 A;  2QK7 A;  4U6V A;  3ANZ A;  4H56 A;  4IYA A;  3LKF A;  4TW1 A;  2LKF A;  4I0N A;  3M2L A;  4IZL A; 
#chains in the Genus database with same CATH homology
 2YGT A;  4IDJ A;  1LKF A;  4P24 A;  4YHD A;  3ROH A;  4P1X B;  3O44 A;  1T5R A;  4P1Y B;  3M3R A;  3B07 B;  5K59 A;  3M4D A;  1PVL A;  4Q7G A;  2QK7 B;  4IYC A;  4IYT A;  4J0O A;  4P1X A;  4TW1 B;  5K59 C;  4P1Y A;  3M4E A;  7AHL A;  3B07 A;  2QK7 A;  4U6V A;  3ANZ A;  4H56 A;  4IYA A;  3LKF A;  4TW1 A;  2LKF A;  4I0N A;  3M2L A;  4IZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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