2VTW | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	205
structure length	205
Chain Sequence	TSSVAAFTSGTIGLSSPTGNFVSSSNNPFNGSYFLQQINTMGMLTTSLYVKVDTTTMGTRPTGAVNENARYFTVWVSSFLTQCNPSNIGQGTLEPSNISMTSFEPARNPISPPVFNMNQNIPYYASRFGVLESYRPIFTGSLNTGSIDVRMQVTPVLATNNTTYNLIAFTFQCASAGLFNPTVNGTVAIGPVVHTCPAARAPVTV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 205 atoms

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205 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Fowl adenovirus 1
publication title	Structure of the C-Terminal Head Domain of the Fowl Adenovirus Type 1 Short Fibre. pubmed doi rcsb
molecule keywords	FIBER PROTEIN 2
total genus	49
structure length	205
sequence length	205
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2008-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16812	AdHead_fibreRBD	C-terminal head domain of the fowl adenovirus type 1 long fibre

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	2vtwA00

2IUNA 2IUMA 2VTWA
chains in the Genus database with same CATH superfamily

3L89A 2J12A 2O39A 4GU4A 1NOBA 4ZDGA 4WYJA 5MHSA 2QLKA 2J1KC 3S6XA 3ZPFA 1KNBA 1KACA 1P6AA 2BZUA 2WBWA 4XL8A 2BSFA 2VTWA 1UXEA 2WGTA 3L88A 4K6VA 2WBVA 2BZVA 2OJ5A 2BT7A 1KKEA 2JJLA 3EXVA 4K6UA 2WGUA 1P69A 2IUNA 4GU3A 4K6TA 4D62A 3O8EA 1UXAA 2OJ6A 3ZPEA 3QNDA 2BT8A 2WSTA 3F0YA 3N0IA 2IUMA 2VRSA 3EOYA 4XC5A 4D63A 4ODBA 4XQAA 3BQ4A 1QIUA 4XQBA 3EXWA 1H7ZA 2W9LC 4K6WA 4ATZA 1UXBA 4CW8A 3CNCA 4LIYA 2J2JA 1QHVA
chains in the Genus database with same CATH topology

2BT8A 4CW8A 3ZPFA 2BT7A 2JJLA 4D62A 2IUMA 2VRSA 2IUNA 4D63A 2BSFA 2VTWA 3ZPEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IUN A;  2IUM A;  2VTW A; 
#chains in the Genus database with same CATH topology
 3L89 A;  2J12 A;  2O39 A;  4GU4 A;  1NOB A;  4ZDG A;  4WYJ A;  5MHS A;  2QLK A;  2J1K C;  3S6X A;  3ZPF A;  1KNB A;  1KAC A;  1P6A A;  2BZU A;  2WBW A;  4XL8 A;  2BSF A;  2VTW A;  1UXE A;  2WGT A;  3L88 A;  4K6V A;  2WBV A;  2BZV A;  2OJ5 A;  2BT7 A;  1KKE A;  2JJL A;  3EXV A;  4K6U A;  2WGU A;  1P69 A;  2IUN A;  4GU3 A;  4K6T A;  4D62 A;  3O8E A;  1UXA A;  2OJ6 A;  3ZPE A;  3QND A;  2BT8 A;  2WST A;  3F0Y A;  3N0I A;  2IUM A;  2VRS A;  3EOY A;  4XC5 A;  4D63 A;  4ODB A;  4XQA A;  3BQ4 A;  1QIU A;  4XQB A;  3EXW A;  1H7Z A;  2W9L C;  4K6W A;  4ATZ A;  1UXB A;  4CW8 A;  3CNC A;  4LIY A;  2J2J A;  1QHV A; 
#chains in the Genus database with same CATH homology
 2BT8 A;  4CW8 A;  3ZPF A;  2BT7 A;  2JJL A;  4D62 A;  2IUM A;  2VRS A;  2IUN A;  4D63 A;  2BSF A;  2VTW A;  3ZPE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VTWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations