2WST | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	176
structure length	176
Chain Sequence	LVYPTLWTGPAPEANVTFSGENSPSGILRLCLSRTGGTVIGTLSVQGSLTNPSTGQTLGMNLYFDADGNVLSESNLVRGSWGMKDQDTLVTPIANGQYLMPNLTAYPRLIQTLTSSYIYTQAHLDHNNSVVDIKIGLNTDLRPTAAYGLSFTMTFTNSPPTSFGTDLVQFGYLGQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 176 atoms

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176 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Porcine adenovirus 4
publication title	Crystallographic structure of porcine adenovirus type 4 fiber head and galectin domains. pubmed doi rcsb
molecule keywords	PUTATIVE FIBER PROTEIN
total genus	27
structure length	176
sequence length	176
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2009-09-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	2wstA00

1NOBA 1UXBA 3CNCA 2J1KC 4LIYA 1P69A 4WYJA 2WGTA 1QHVA 3N0IA 2J12A 1KACA 2WGUA 3EXWA 4K6TA 2BZUA 4XQBA 2WBVA 3O8EA 1UXEA 3EXVA 1H7ZA 4ATZA 3F0YA 2O39A 4K6UA 4XQAA 1UXAA 2BZVA 1QIUA 2WSTA 3L88A 4K6VA 4ZDGA 3BQ4A 4K6WA 4XL8A 2QLKA 1P6AA 2WBWA 3QNDA 2W9LC 2J2JA 3L89A 1KNBA
chains in the Genus database with same CATH superfamily

1NOBA 2BSFA 4D62A 2IUMA 1UXBA 3CNCA 3S6XA 2J1KC 4D63A 4LIYA 1P69A 2JJLA 4WYJA 3QNDA 4GU3A 2WGTA 4ZDGA 1QHVA 3N0IA 2OJ6A 2J12A 4ODBA 2BT7A 1KACA 2WGUA 3EXWA 4K6TA 2BZUA 4XQBA 2WBVA 3ZPFA 3O8EA 1UXEA 2IUNA 4GU4A 5MHSA 3EXVA 1H7ZA 4ATZA 3F0YA 2O39A 4K6UA 4XQAA 2VTWA 1UXAA 2BZVA 1QIUA 1KKEA 2WSTA 2BT8A 2OJ5A 3L88A 3BQ4A 4K6WA 2VRSA 4K6VA 4XC5A 2QLKA 4XL8A 3ZPEA 1P6AA 2WBWA 3EOYA 2W9LC 2J2JA 3L89A 4CW8A 1KNBA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NOB A;  1UXB A;  3CNC A;  2J1K C;  4LIY A;  1P69 A;  4WYJ A;  2WGT A;  1QHV A;  3N0I A;  2J12 A;  1KAC A;  2WGU A;  3EXW A;  4K6T A;  2BZU A;  4XQB A;  2WBV A;  3O8E A;  1UXE A;  3EXV A;  1H7Z A;  4ATZ A;  3F0Y A;  2O39 A;  4K6U A;  4XQA A;  1UXA A;  2BZV A;  1QIU A;  2WST A;  3L88 A;  4K6V A;  4ZDG A;  3BQ4 A;  4K6W A;  4XL8 A;  2QLK A;  1P6A A;  2WBW A;  3QND A;  2W9L C;  2J2J A;  3L89 A;  1KNB A; 
#chains in the Genus database with same CATH topology
 1NOB A;  2BSF A;  4D62 A;  2IUM A;  1UXB A;  3CNC A;  3S6X A;  2J1K C;  4D63 A;  4LIY A;  1P69 A;  2JJL A;  4WYJ A;  3QND A;  4GU3 A;  2WGT A;  4ZDG A;  1QHV A;  3N0I A;  2OJ6 A;  2J12 A;  4ODB A;  2BT7 A;  1KAC A;  2WGU A;  3EXW A;  4K6T A;  2BZU A;  4XQB A;  2WBV A;  3ZPF A;  3O8E A;  1UXE A;  2IUN A;  4GU4 A;  5MHS A;  3EXV A;  1H7Z A;  4ATZ A;  3F0Y A;  2O39 A;  4K6U A;  4XQA A;  2VTW A;  1UXA A;  2BZV A;  1QIU A;  1KKE A;  2WST A;  2BT8 A;  2OJ5 A;  3L88 A;  3BQ4 A;  4K6W A;  2VRS A;  4K6V A;  4XC5 A;  2QLK A;  4XL8 A;  3ZPE A;  1P6A A;  2WBW A;  3EOY A;  2W9L C;  2J2J A;  3L89 A;  4CW8 A;  1KNB A; 
#chains in the Genus database with same CATH homology
 1NOB A;  1UXB A;  3CNC A;  2J1K C;  4LIY A;  1P69 A;  4WYJ A;  2WGT A;  1QHV A;  3N0I A;  2J12 A;  1KAC A;  2WGU A;  3EXW A;  4K6T A;  2BZU A;  4XQB A;  2WBV A;  3O8E A;  1UXE A;  3EXV A;  1H7Z A;  4ATZ A;  3F0Y A;  2O39 A;  4K6U A;  4XQA A;  1UXA A;  2BZV A;  1QIU A;  2WST A;  3L88 A;  4K6V A;  4ZDG A;  3BQ4 A;  4K6W A;  4XL8 A;  2QLK A;  1P6A A;  2WBW A;  3QND A;  2W9L C;  2J2J A;  3L89 A;  1KNB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2WSTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations