3EOY | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	161
structure length	161
Chain Sequence	PNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 161 atoms

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161 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein/cell adhesion
source organism	Reovirus
publication title	Structure of reovirus sigma1 in complex with its receptor junctional adhesion molecule-A pubmed doi rcsb
molecule keywords	Outer capsid protein sigma-1
total genus	32
structure length	161
sequence length	161
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2008-09-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	3eoyA00

2OJ5A 4GU3A 1KKEA 2OJ6A 3S6XA 4ODBA 5MHSA 4XC5A 4GU4A 3EOYA
chains in the Genus database with same CATH superfamily

2J1KC 4GU3A 3BQ4A 1KKEA 2WBVA 4K6VA 4ODBA 4WYJA 2QLKA 4XC5A 2WBWA 4GU4A 4XQBA 2OJ5A 1KNBA 1UXBA 1QIUA 3L89A 4CW8A 4D63A 3S6XA 2BT7A 2WSTA 3F0YA 2BZVA 2J2JA 3ZPEA 4K6WA 4D62A 2BSFA 1H7ZA 2VTWA 2O39A 4ZDGA 4ATZA 1KACA 4K6UA 2IUNA 2BT8A 3L88A 3CNCA 2W9LC 1P6AA 2WGTA 3EXVA 3N0IA 1QHVA 3EXWA 4K6TA 2IUMA 2WGUA 1UXEA 2VRSA 4XL8A 3ZPFA 2OJ6A 2J12A 2JJLA 4XQAA 1NOBA 1UXAA 2BZUA 4LIYA 3O8EA 1P69A 3QNDA 5MHSA 3EOYA
chains in the Genus database with same CATH topology

2OJ5A 4GU3A 1KKEA 2OJ6A 3S6XA 4ODBA 5MHSA 4XC5A 4GU4A 3EOYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2OJ5 A;  4GU3 A;  1KKE A;  2OJ6 A;  3S6X A;  4ODB A;  5MHS A;  4XC5 A;  4GU4 A;  3EOY A; 
#chains in the Genus database with same CATH topology
 2J1K C;  4GU3 A;  3BQ4 A;  1KKE A;  2WBV A;  4K6V A;  4ODB A;  4WYJ A;  2QLK A;  4XC5 A;  2WBW A;  4GU4 A;  4XQB A;  2OJ5 A;  1KNB A;  1UXB A;  1QIU A;  3L89 A;  4CW8 A;  4D63 A;  3S6X A;  2BT7 A;  2WST A;  3F0Y A;  2BZV A;  2J2J A;  3ZPE A;  4K6W A;  4D62 A;  2BSF A;  1H7Z A;  2VTW A;  2O39 A;  4ZDG A;  4ATZ A;  1KAC A;  4K6U A;  2IUN A;  2BT8 A;  3L88 A;  3CNC A;  2W9L C;  1P6A A;  2WGT A;  3EXV A;  3N0I A;  1QHV A;  3EXW A;  4K6T A;  2IUM A;  2WGU A;  1UXE A;  2VRS A;  4XL8 A;  3ZPF A;  2OJ6 A;  2J12 A;  2JJL A;  4XQA A;  1NOB A;  1UXA A;  2BZU A;  4LIY A;  3O8E A;  1P69 A;  3QND A;  5MHS A;  3EOY A; 
#chains in the Genus database with same CATH homology
 2OJ5 A;  4GU3 A;  1KKE A;  2OJ6 A;  3S6X A;  4ODB A;  5MHS A;  4XC5 A;  4GU4 A;  3EOY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EOYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN