3EXV | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	197
structure length	197
Chain Sequence	DNINTLWTGVNPTEANCQIMNSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTHRNINFTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTTAYPFNDNSREKENYIYGTCYYTASDRTAFPIDISVMLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFYYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 197 atoms

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197 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus b
publication title	An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46 pubmed doi rcsb
molecule keywords	Fiber protein
total genus	50
structure length	197
sequence length	197
ec nomenclature
pdb deposition date	2008-10-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	3exvA00

2WSTA 1P6AA 1UXEA 3EXWA 4K6TA 2WGUA 3BQ4A 2W9LC 2O39A 1QIUA 3L88A 2BZVA 1UXBA 4ZDGA 1P69A 1H7ZA 1UXAA 1QHVA 1NOBA 3CNCA 3N0IA 4XQAA 3EXVA 4XQBA 2WGTA 4K6VA 2J1KC 2WBVA 4K6UA 2J2JA 2BZUA 3QNDA 4WYJA 3F0YA 1KACA 2QLKA 1KNBA 3O8EA 4K6WA 2WBWA 3L89A 4XL8A 2J12A 4LIYA 4ATZA
chains in the Genus database with same CATH superfamily

2BSFA 2WSTA 2VRSA 4D62A 1P6AA 1UXEA 3EXWA 4GU3A 2WGUA 3BQ4A 2W9LC 4K6TA 2O39A 1QIUA 2IUNA 2BZVA 1UXBA 3L88A 1P69A 1H7ZA 1UXAA 1QHVA 1NOBA 3CNCA 2JJLA 4ZDGA 3N0IA 2OJ5A 4GU4A 4XC5A 4XQAA 3EXVA 4XQBA 4CW8A 2BT8A 2WGTA 4K6VA 2J1KC 2WBVA 4K6UA 2J2JA 3EOYA 3ZPEA 2VTWA 2BZUA 3QNDA 4WYJA 3S6XA 3F0YA 1KACA 2QLKA 2IUMA 1KNBA 3O8EA 5MHSA 4K6WA 2WBWA 3L89A 2OJ6A 4XL8A 4ATZA 2J12A 1KKEA 3ZPFA 4LIYA 4ODBA 2BT7A 4D63A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2WST A;  1P6A A;  1UXE A;  3EXW A;  4K6T A;  2WGU A;  3BQ4 A;  2W9L C;  2O39 A;  1QIU A;  3L88 A;  2BZV A;  1UXB A;  4ZDG A;  1P69 A;  1H7Z A;  1UXA A;  1QHV A;  1NOB A;  3CNC A;  3N0I A;  4XQA A;  3EXV A;  4XQB A;  2WGT A;  4K6V A;  2J1K C;  2WBV A;  4K6U A;  2J2J A;  2BZU A;  3QND A;  4WYJ A;  3F0Y A;  1KAC A;  2QLK A;  1KNB A;  3O8E A;  4K6W A;  2WBW A;  3L89 A;  4XL8 A;  2J12 A;  4LIY A;  4ATZ A; 
#chains in the Genus database with same CATH topology
 2BSF A;  2WST A;  2VRS A;  4D62 A;  1P6A A;  1UXE A;  3EXW A;  4GU3 A;  2WGU A;  3BQ4 A;  2W9L C;  4K6T A;  2O39 A;  1QIU A;  2IUN A;  2BZV A;  1UXB A;  3L88 A;  1P69 A;  1H7Z A;  1UXA A;  1QHV A;  1NOB A;  3CNC A;  2JJL A;  4ZDG A;  3N0I A;  2OJ5 A;  4GU4 A;  4XC5 A;  4XQA A;  3EXV A;  4XQB A;  4CW8 A;  2BT8 A;  2WGT A;  4K6V A;  2J1K C;  2WBV A;  4K6U A;  2J2J A;  3EOY A;  3ZPE A;  2VTW A;  2BZU A;  3QND A;  4WYJ A;  3S6X A;  3F0Y A;  1KAC A;  2QLK A;  2IUM A;  1KNB A;  3O8E A;  5MHS A;  4K6W A;  2WBW A;  3L89 A;  2OJ6 A;  4XL8 A;  4ATZ A;  2J12 A;  1KKE A;  3ZPF A;  4LIY A;  4ODB A;  2BT7 A;  4D63 A; 
#chains in the Genus database with same CATH homology
 2WST A;  1P6A A;  1UXE A;  3EXW A;  4K6T A;  2WGU A;  3BQ4 A;  2W9L C;  2O39 A;  1QIU A;  3L88 A;  2BZV A;  1UXB A;  4ZDG A;  1P69 A;  1H7Z A;  1UXA A;  1QHV A;  1NOB A;  3CNC A;  3N0I A;  4XQA A;  3EXV A;  4XQB A;  2WGT A;  4K6V A;  2J1K C;  2WBV A;  4K6U A;  2J2J A;  2BZU A;  3QND A;  4WYJ A;  3F0Y A;  1KAC A;  2QLK A;  1KNB A;  3O8E A;  4K6W A;  2WBW A;  3L89 A;  4XL8 A;  2J12 A;  4LIY A;  4ATZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EXVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations