3EXW | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	198
structure length	198
Chain Sequence	DDNINTLWTGVNPTTANCQIMASSESNDCKLILTLVKTGALVTAFVYVIGVSNDFNMLTTHKNINFTAELFFDSTGNLLTSLSSLKTPLNHKSGQNMATGALTNAKGFMPSTTAYPFNVNSREKENYIYGTCYYTASDHTAFPIDISVMLNQRALNNETSYCIRVTWSWNTGVAPEVQTSATTLVTSPFTFYYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 198 atoms

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198 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus 7
publication title	An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46 pubmed doi rcsb
molecule keywords	L5 fiber protein
total genus	50
structure length	198
sequence length	198
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2008-10-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	3exwA00

1P6AA 4K6UA 2WBWA 2J12A 1QIUA 2WBVA 3EXVA 4XL8A 1UXBA 3N0IA 1UXAA 2O39A 1QHVA 2W9LC 1KACA 3BQ4A 3F0YA 2BZUA 4LIYA 3CNCA 1NOBA 2WGUA 4ATZA 1P69A 2BZVA 4WYJA 3L89A 3QNDA 2WGTA 4K6VA 1UXEA 4XQAA 4ZDGA 2J1KC 2J2JA 3EXWA 1H7ZA 4K6WA 3L88A 2QLKA 2WSTA 4K6TA 3O8EA 4XQBA 1KNBA
chains in the Genus database with same CATH superfamily

1P6AA 4K6UA 2WBWA 2BT7A 2J12A 1QIUA 2WBVA 3EXVA 4XL8A 1UXBA 3N0IA 1UXAA 2O39A 1QHVA 2W9LC 1KACA 2OJ6A 3BQ4A 5MHSA 4ODBA 3F0YA 2BZUA 4LIYA 2IUMA 2VTWA 3CNCA 1NOBA 4CW8A 2WGUA 4ATZA 3ZPEA 4D63A 1P69A 2BT8A 2BZVA 4WYJA 3L89A 3QNDA 2WGTA 4K6VA 2JJLA 1UXEA 4XQAA 2IUNA 4ZDGA 2J1KC 3S6XA 3ZPFA 2J2JA 3EXWA 1H7ZA 1KKEA 4K6WA 4D62A 3L88A 2QLKA 2WSTA 4GU3A 2VRSA 4XC5A 2OJ5A 4K6TA 3O8EA 4GU4A 4XQBA 3EOYA 1KNBA 2BSFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1P6A A;  4K6U A;  2WBW A;  2J12 A;  1QIU A;  2WBV A;  3EXV A;  4XL8 A;  1UXB A;  3N0I A;  1UXA A;  2O39 A;  1QHV A;  2W9L C;  1KAC A;  3BQ4 A;  3F0Y A;  2BZU A;  4LIY A;  3CNC A;  1NOB A;  2WGU A;  4ATZ A;  1P69 A;  2BZV A;  4WYJ A;  3L89 A;  3QND A;  2WGT A;  4K6V A;  1UXE A;  4XQA A;  4ZDG A;  2J1K C;  2J2J A;  3EXW A;  1H7Z A;  4K6W A;  3L88 A;  2QLK A;  2WST A;  4K6T A;  3O8E A;  4XQB A;  1KNB A; 
#chains in the Genus database with same CATH topology
 1P6A A;  4K6U A;  2WBW A;  2BT7 A;  2J12 A;  1QIU A;  2WBV A;  3EXV A;  4XL8 A;  1UXB A;  3N0I A;  1UXA A;  2O39 A;  1QHV A;  2W9L C;  1KAC A;  2OJ6 A;  3BQ4 A;  5MHS A;  4ODB A;  3F0Y A;  2BZU A;  4LIY A;  2IUM A;  2VTW A;  3CNC A;  1NOB A;  4CW8 A;  2WGU A;  4ATZ A;  3ZPE A;  4D63 A;  1P69 A;  2BT8 A;  2BZV A;  4WYJ A;  3L89 A;  3QND A;  2WGT A;  4K6V A;  2JJL A;  1UXE A;  4XQA A;  2IUN A;  4ZDG A;  2J1K C;  3S6X A;  3ZPF A;  2J2J A;  3EXW A;  1H7Z A;  1KKE A;  4K6W A;  4D62 A;  3L88 A;  2QLK A;  2WST A;  4GU3 A;  2VRS A;  4XC5 A;  2OJ5 A;  4K6T A;  3O8E A;  4GU4 A;  4XQB A;  3EOY A;  1KNB A;  2BSF A; 
#chains in the Genus database with same CATH homology
 1P6A A;  4K6U A;  2WBW A;  2J12 A;  1QIU A;  2WBV A;  3EXV A;  4XL8 A;  1UXB A;  3N0I A;  1UXA A;  2O39 A;  1QHV A;  2W9L C;  1KAC A;  3BQ4 A;  3F0Y A;  2BZU A;  4LIY A;  3CNC A;  1NOB A;  2WGU A;  4ATZ A;  1P69 A;  2BZV A;  4WYJ A;  3L89 A;  3QND A;  2WGT A;  4K6V A;  1UXE A;  4XQA A;  4ZDG A;  2J1K C;  2J2J A;  3EXW A;  1H7Z A;  4K6W A;  3L88 A;  2QLK A;  2WST A;  4K6T A;  3O8E A;  4XQB A;  1KNB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EXWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations