3F0Y | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	198
structure length	198
Chain Sequence	DDNINTLWTGVNPTEANCQMMDSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTYRNINFTAELFFDSAGNLLTSLSSLKTPLNHKSGQNMATGAITNAKSFMPSTTAYPFNNNSREKENYIYGTCHYTASDHTAFPIDISVMLNQRAIRADTSYCIRITWSWNTGDAPEGQTSATTLVTSPFTFYYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 198 atoms

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198 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus 14
publication title	An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46 pubmed doi rcsb
molecule keywords	Fiber protein
total genus	47
structure length	198
sequence length	198
chains with identical sequence	B, C, D, E, F, G, H, I
ec nomenclature
pdb deposition date	2008-10-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	3f0yA00

3L89A 3O8EA 3EXVA 1H7ZA 2WGTA 3L88A 1UXAA 3N0IA 4K6UA 1UXBA 1NOBA 2BZUA 2J12A 2J1KC 3F0YA 3QNDA 1P69A 4XL8A 2QLKA 3EXWA 4ZDGA 2WGUA 2O39A 1KNBA 4ATZA 1KACA 4WYJA 1UXEA 4K6VA 4XQAA 4XQBA 3CNCA 4K6TA 4LIYA 2BZVA 2WBVA 2J2JA 2WBWA 1QHVA 2WSTA 4K6WA 2W9LC 3BQ4A 1QIUA 1P6AA
chains in the Genus database with same CATH superfamily

3L89A 3O8EA 2OJ6A 3S6XA 3EXVA 1H7ZA 2WGTA 4ODBA 2IUMA 3L88A 1UXAA 3N0IA 2OJ5A 4K6UA 1UXBA 1NOBA 2BT7A 2BZUA 2J12A 2J1KC 3F0YA 1KKEA 3ZPFA 2JJLA 3EOYA 3QNDA 1P69A 4XL8A 2QLKA 2BSFA 3EXWA 2IUNA 1KNBA 2O39A 2WGUA 4ZDGA 2VRSA 4ATZA 1KACA 4D63A 2BT8A 4GU3A 4WYJA 1UXEA 5MHSA 4XC5A 4K6VA 4CW8A 4XQAA 2VTWA 4D62A 4XQBA 3CNCA 4K6TA 4LIYA 2BZVA 4GU4A 2WBVA 2J2JA 2WBWA 1QHVA 2WSTA 4K6WA 2W9LC 3ZPEA 3BQ4A 1QIUA 1P6AA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3L89 A;  3O8E A;  3EXV A;  1H7Z A;  2WGT A;  3L88 A;  1UXA A;  3N0I A;  4K6U A;  1UXB A;  1NOB A;  2BZU A;  2J12 A;  2J1K C;  3F0Y A;  3QND A;  1P69 A;  4XL8 A;  2QLK A;  3EXW A;  4ZDG A;  2WGU A;  2O39 A;  1KNB A;  4ATZ A;  1KAC A;  4WYJ A;  1UXE A;  4K6V A;  4XQA A;  4XQB A;  3CNC A;  4K6T A;  4LIY A;  2BZV A;  2WBV A;  2J2J A;  2WBW A;  1QHV A;  2WST A;  4K6W A;  2W9L C;  3BQ4 A;  1QIU A;  1P6A A; 
#chains in the Genus database with same CATH topology
 3L89 A;  3O8E A;  2OJ6 A;  3S6X A;  3EXV A;  1H7Z A;  2WGT A;  4ODB A;  2IUM A;  3L88 A;  1UXA A;  3N0I A;  2OJ5 A;  4K6U A;  1UXB A;  1NOB A;  2BT7 A;  2BZU A;  2J12 A;  2J1K C;  3F0Y A;  1KKE A;  3ZPF A;  2JJL A;  3EOY A;  3QND A;  1P69 A;  4XL8 A;  2QLK A;  2BSF A;  3EXW A;  2IUN A;  1KNB A;  2O39 A;  2WGU A;  4ZDG A;  2VRS A;  4ATZ A;  1KAC A;  4D63 A;  2BT8 A;  4GU3 A;  4WYJ A;  1UXE A;  5MHS A;  4XC5 A;  4K6V A;  4CW8 A;  4XQA A;  2VTW A;  4D62 A;  4XQB A;  3CNC A;  4K6T A;  4LIY A;  2BZV A;  4GU4 A;  2WBV A;  2J2J A;  2WBW A;  1QHV A;  2WST A;  4K6W A;  2W9L C;  3ZPE A;  3BQ4 A;  1QIU A;  1P6A A; 
#chains in the Genus database with same CATH homology
 3L89 A;  3O8E A;  3EXV A;  1H7Z A;  2WGT A;  3L88 A;  1UXA A;  3N0I A;  4K6U A;  1UXB A;  1NOB A;  2BZU A;  2J12 A;  2J1K C;  3F0Y A;  3QND A;  1P69 A;  4XL8 A;  2QLK A;  3EXW A;  4ZDG A;  2WGU A;  2O39 A;  1KNB A;  4ATZ A;  1KAC A;  4WYJ A;  1UXE A;  4K6V A;  4XQA A;  4XQB A;  3CNC A;  4K6T A;  4LIY A;  2BZV A;  2WBV A;  2J2J A;  2WBW A;  1QHV A;  2WST A;  4K6W A;  2W9L C;  3BQ4 A;  1QIU A;  1P6A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3F0YA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations