3IAM7

Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, reduced, 2 mol/asu, with bound nadh
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
127
structure length
127
Chain Sequence
ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the mechanism of respiratory complex I
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords NADH-quinone oxidoreductase subunit 1
total genus 30
structure length 127
sequence length 127
chains with identical sequence H
ec nomenclature ec 1.6.99.5: Transferred entry: 1.6.5.11.
pdb deposition date 2009-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
7 PF11497 NADH_Oxid_Nqo15 NADH-quinone oxidoreductase chain 15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.80 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Metal Transport, Frataxin; Chain A 3iam700
3I9V7 3IAM7 2FUG7 3IAS7 4HEA7
chains in the Genus database with same CATH superfamily
3OERA 1EW4A 3IAS7 4LK8A 4JPDA 4LP1A 2GA5A 1WHZA 2FQLA 3T3XA 3S4MA 3T3KA 3SSCA 1EKGA 2P1XA 4C26A 3I9V7 2EFFA 1SOYA 3S5EA 3IAM7 3GD0A 3T3TA 3T3LA 3OEQA 4EC2A 4HEA7 3IMOA 3GD9A 3S5FA 3S5DA 1D2MA 1LY7A 4P78C 3SSEA 2FUG7 3SSDA 3A5PA 1V5RA 4HS5A 3T3JA
chains in the Genus database with same CATH topology
3I9V7 1D2MA 3SSEA 3IAM7 3GD0A 2FUG7 3SSDA 3A5PA 3IAS7 4HEA7 3GD9A 3SSCA 3IMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I9V 7;  3IAM 7;  2FUG 7;  3IAS 7;  4HEA 7; 
#chains in the Genus database with same CATH topology
 3OER A;  1EW4 A;  3IAS 7;  4LK8 A;  4JPD A;  4LP1 A;  2GA5 A;  1WHZ A;  2FQL A;  3T3X A;  3S4M A;  3T3K A;  3SSC A;  1EKG A;  2P1X A;  4C26 A;  3I9V 7;  2EFF A;  1SOY A;  3S5E A;  3IAM 7;  3GD0 A;  3T3T A;  3T3L A;  3OEQ A;  4EC2 A;  4HEA 7;  3IMO A;  3GD9 A;  3S5F A;  3S5D A;  1D2M A;  1LY7 A;  4P78 C;  3SSE A;  2FUG 7;  3SSD A;  3A5P A;  1V5R A;  4HS5 A;  3T3J A; 
#chains in the Genus database with same CATH homology
 3I9V 7;  1D2M A;  3SSE A;  3IAM 7;  3GD0 A;  2FUG 7;  3SSD A;  3A5P A;  3IAS 7;  4HEA 7;  3GD9 A;  3SSC A;  3IMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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