3IAS7

Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, oxidized, 4 mol/asu, re-refined to 3.15 angstrom resolution
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
127
Chain Sequence
ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the mechanism of respiratory complex I
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords NADH-quinone oxidoreductase subunit 1
total genus 35
structure length 127
sequence length 127
chains with identical sequence H, Q, Z
ec nomenclature ec 1.6.99.5: Transferred entry: 1.6.5.11.
pdb deposition date 2009-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
7 PF11497 NADH_Oxid_Nqo15 NADH-quinone oxidoreductase chain 15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.80 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Metal Transport, Frataxin; Chain A 3ias700
2FUG7 3I9V7 3IAS7 3IAM7 4HEA7
chains in the Genus database with same CATH superfamily
4JPDA 3OEQA 3SSEA 1D2MA 2P1XA 3T3XA 4P78C 1LY7A 1WHZA 2EFFA 2FQLA 3IAS7 4HEA7 4LP1A 3S5FA 3S5DA 4C26A 3SSCA 4EC2A 1EW4A 3I9V7 3T3LA 3T3KA 3GD9A 3SSDA 1SOYA 3IAM7 3IMOA 3T3JA 3S4MA 4LK8A 3GD0A 3A5PA 2GA5A 1EKGA 1V5RA 2FUG7 4HS5A 3OERA 3T3TA 3S5EA
chains in the Genus database with same CATH topology
3SSCA 2FUG7 3I9V7 3SSEA 1D2MA 3GD9A 3IAS7 3IAM7 3GD0A 4HEA7 3A5PA 3SSDA 3IMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUG 7;  3I9V 7;  3IAS 7;  3IAM 7;  4HEA 7; 
#chains in the Genus database with same CATH topology
 4JPD A;  3OEQ A;  3SSE A;  1D2M A;  2P1X A;  3T3X A;  4P78 C;  1LY7 A;  1WHZ A;  2EFF A;  2FQL A;  3IAS 7;  4HEA 7;  4LP1 A;  3S5F A;  3S5D A;  4C26 A;  3SSC A;  4EC2 A;  1EW4 A;  3I9V 7;  3T3L A;  3T3K A;  3GD9 A;  3SSD A;  1SOY A;  3IAM 7;  3IMO A;  3T3J A;  3S4M A;  4LK8 A;  3GD0 A;  3A5P A;  2GA5 A;  1EKG A;  1V5R A;  2FUG 7;  4HS5 A;  3OER A;  3T3T A;  3S5E A; 
#chains in the Genus database with same CATH homology
 3SSC A;  2FUG 7;  3I9V 7;  3SSE A;  1D2M A;  3GD9 A;  3IAS 7;  3IAM 7;  3GD0 A;  4HEA 7;  3A5P A;  3SSD A;  3IMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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