3O8E | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	197
structure length	197
Chain Sequence	DNINTLWTGVNPTEANCQIMNSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTHRNINFTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTTAYPFNDNSREKENYIYGTCYYTASDRTAFPIDISVMLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFYYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 197 atoms

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197 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell adhesion/immune system
source organism	Human adenovirus 11
publication title	Structure of the extracellular portion of CD46 provides insights into its interactions with complement proteins and pathogens. pubmed doi rcsb
molecule keywords	Fiber 36.1 kDa protein
total genus	46
structure length	197
sequence length	197
chains with identical sequence	C
ec nomenclature
pdb deposition date	2010-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	3o8eA00

3O8EA 1KNBA 4WYJA 2WBWA 1UXBA 4LIYA 1QIUA 3L88A 3N0IA 1QHVA 1P6AA 3QNDA 2J12A 3BQ4A 3L89A 3CNCA 3F0YA 2WGTA 1KACA 2WBVA 4K6WA 4XQAA 2O39A 2BZVA 1H7ZA 4K6UA 4XL8A 1P69A 2BZUA 1NOBA 2W9LC 4XQBA 3EXVA 1UXEA 3EXWA 4K6VA 2WGUA 4ATZA 2J2JA 2WSTA 4K6TA 4ZDGA 1UXAA 2J1KC 2QLKA
chains in the Genus database with same CATH superfamily

3O8EA 1KNBA 3ZPEA 4WYJA 2WBWA 4XC5A 2BT7A 1UXBA 4LIYA 1QIUA 3L88A 3N0IA 1QHVA 1P6AA 3QNDA 4D62A 2J12A 2BSFA 3BQ4A 3L89A 3CNCA 4ODBA 5MHSA 3EOYA 2OJ6A 3F0YA 4D63A 2WGTA 1KACA 2WBVA 4K6WA 4XQAA 2JJLA 2O39A 2BZVA 1H7ZA 1KKEA 2IUNA 2BT8A 4K6UA 4XL8A 1P69A 4CW8A 2BZUA 1NOBA 2W9LC 4XQBA 2VRSA 4GU4A 3EXVA 1UXEA 2VTWA 3EXWA 4K6VA 2WGUA 4ATZA 3ZPFA 4GU3A 2J2JA 2WSTA 2IUMA 4K6TA 1UXAA 2J1KC 4ZDGA 3S6XA 2QLKA 2OJ5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3O8E A;  1KNB A;  4WYJ A;  2WBW A;  1UXB A;  4LIY A;  1QIU A;  3L88 A;  3N0I A;  1QHV A;  1P6A A;  3QND A;  2J12 A;  3BQ4 A;  3L89 A;  3CNC A;  3F0Y A;  2WGT A;  1KAC A;  2WBV A;  4K6W A;  4XQA A;  2O39 A;  2BZV A;  1H7Z A;  4K6U A;  4XL8 A;  1P69 A;  2BZU A;  1NOB A;  2W9L C;  4XQB A;  3EXV A;  1UXE A;  3EXW A;  4K6V A;  2WGU A;  4ATZ A;  2J2J A;  2WST A;  4K6T A;  4ZDG A;  1UXA A;  2J1K C;  2QLK A; 
#chains in the Genus database with same CATH topology
 3O8E A;  1KNB A;  3ZPE A;  4WYJ A;  2WBW A;  4XC5 A;  2BT7 A;  1UXB A;  4LIY A;  1QIU A;  3L88 A;  3N0I A;  1QHV A;  1P6A A;  3QND A;  4D62 A;  2J12 A;  2BSF A;  3BQ4 A;  3L89 A;  3CNC A;  4ODB A;  5MHS A;  3EOY A;  2OJ6 A;  3F0Y A;  4D63 A;  2WGT A;  1KAC A;  2WBV A;  4K6W A;  4XQA A;  2JJL A;  2O39 A;  2BZV A;  1H7Z A;  1KKE A;  2IUN A;  2BT8 A;  4K6U A;  4XL8 A;  1P69 A;  4CW8 A;  2BZU A;  1NOB A;  2W9L C;  4XQB A;  2VRS A;  4GU4 A;  3EXV A;  1UXE A;  2VTW A;  3EXW A;  4K6V A;  2WGU A;  4ATZ A;  3ZPF A;  4GU3 A;  2J2J A;  2WST A;  2IUM A;  4K6T A;  1UXA A;  2J1K C;  4ZDG A;  3S6X A;  2QLK A;  2OJ5 A; 
#chains in the Genus database with same CATH homology
 3O8E A;  1KNB A;  4WYJ A;  2WBW A;  1UXB A;  4LIY A;  1QIU A;  3L88 A;  3N0I A;  1QHV A;  1P6A A;  3QND A;  2J12 A;  3BQ4 A;  3L89 A;  3CNC A;  3F0Y A;  2WGT A;  1KAC A;  2WBV A;  4K6W A;  4XQA A;  2O39 A;  2BZV A;  1H7Z A;  4K6U A;  4XL8 A;  1P69 A;  2BZU A;  1NOB A;  2W9L C;  4XQB A;  3EXV A;  1UXE A;  3EXW A;  4K6V A;  2WGU A;  4ATZ A;  2J2J A;  2WST A;  4K6T A;  4ZDG A;  1UXA A;  2J1K C;  2QLK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3O8EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations