3QND | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	184
structure length	184
Chain Sequence	DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 184 atoms

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184 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Cell adhesion/inhibitor
source organism	Human adenovirus 37
publication title	A potent trivalent sialic Acid inhibitor of adenovirus type 37 infection of human corneal cells. pubmed doi rcsb
molecule keywords	Fiber protein
total genus	42
structure length	184
sequence length	184
chains with identical sequence	B, C, E, F, G
ec nomenclature
pdb deposition date	2011-02-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	3qndA00

3EXVA 3QNDA 4K6WA 4K6TA 1UXEA 2QLKA 3L89A 3CNCA 3N0IA 2J1KC 1UXBA 4XL8A 2WGTA 1NOBA 2O39A 4WYJA 3EXWA 1KACA 1QHVA 2WBVA 1KNBA 3L88A 2WBWA 4LIYA 3F0YA 2J2JA 1H7ZA 2W9LC 3O8EA 4ZDGA 1QIUA 1P69A 4ATZA 1P6AA 4K6UA 4XQAA 4XQBA 2J12A 2WGUA 2BZVA 1UXAA 2WSTA 3BQ4A 4K6VA 2BZUA
chains in the Genus database with same CATH superfamily

3EXVA 3QNDA 4K6WA 4K6TA 4GU3A 4XC5A 1UXEA 2VTWA 4D63A 2QLKA 2BSFA 3CNCA 3L89A 1KKEA 2JJLA 2OJ6A 2J1KC 3N0IA 3EOYA 4ODBA 4D62A 1UXBA 4XL8A 2WGTA 1NOBA 2O39A 4GU4A 4WYJA 3EXWA 1KACA 1QHVA 2WBVA 1KNBA 3L88A 3ZPEA 3S6XA 2WBWA 4LIYA 2OJ5A 3F0YA 2J2JA 1H7ZA 2W9LC 3O8EA 4ZDGA 1QIUA 4CW8A 2BT7A 1P69A 2IUMA 4ATZA 1P6AA 2IUNA 4K6UA 4XQAA 4XQBA 2VRSA 2J12A 2BT8A 2WGUA 3ZPFA 2BZVA 1UXAA 5MHSA 2WSTA 3BQ4A 4K6VA 2BZUA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3EXV A;  3QND A;  4K6W A;  4K6T A;  1UXE A;  2QLK A;  3L89 A;  3CNC A;  3N0I A;  2J1K C;  1UXB A;  4XL8 A;  2WGT A;  1NOB A;  2O39 A;  4WYJ A;  3EXW A;  1KAC A;  1QHV A;  2WBV A;  1KNB A;  3L88 A;  2WBW A;  4LIY A;  3F0Y A;  2J2J A;  1H7Z A;  2W9L C;  3O8E A;  4ZDG A;  1QIU A;  1P69 A;  4ATZ A;  1P6A A;  4K6U A;  4XQA A;  4XQB A;  2J12 A;  2WGU A;  2BZV A;  1UXA A;  2WST A;  3BQ4 A;  4K6V A;  2BZU A; 
#chains in the Genus database with same CATH topology
 3EXV A;  3QND A;  4K6W A;  4K6T A;  4GU3 A;  4XC5 A;  1UXE A;  2VTW A;  4D63 A;  2QLK A;  2BSF A;  3CNC A;  3L89 A;  1KKE A;  2JJL A;  2OJ6 A;  2J1K C;  3N0I A;  3EOY A;  4ODB A;  4D62 A;  1UXB A;  4XL8 A;  2WGT A;  1NOB A;  2O39 A;  4GU4 A;  4WYJ A;  3EXW A;  1KAC A;  1QHV A;  2WBV A;  1KNB A;  3L88 A;  3ZPE A;  3S6X A;  2WBW A;  4LIY A;  2OJ5 A;  3F0Y A;  2J2J A;  1H7Z A;  2W9L C;  3O8E A;  4ZDG A;  1QIU A;  4CW8 A;  2BT7 A;  1P69 A;  2IUM A;  4ATZ A;  1P6A A;  2IUN A;  4K6U A;  4XQA A;  4XQB A;  2VRS A;  2J12 A;  2BT8 A;  2WGU A;  3ZPF A;  2BZV A;  1UXA A;  5MHS A;  2WST A;  3BQ4 A;  4K6V A;  2BZU A; 
#chains in the Genus database with same CATH homology
 3EXV A;  3QND A;  4K6W A;  4K6T A;  1UXE A;  2QLK A;  3L89 A;  3CNC A;  3N0I A;  2J1K C;  1UXB A;  4XL8 A;  2WGT A;  1NOB A;  2O39 A;  4WYJ A;  3EXW A;  1KAC A;  1QHV A;  2WBV A;  1KNB A;  3L88 A;  2WBW A;  4LIY A;  3F0Y A;  2J2J A;  1H7Z A;  2W9L C;  3O8E A;  4ZDG A;  1QIU A;  1P69 A;  4ATZ A;  1P6A A;  4K6U A;  4XQA A;  4XQB A;  2J12 A;  2WGU A;  2BZV A;  1UXA A;  2WST A;  3BQ4 A;  4K6V A;  2BZU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3QNDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations