3ZPE | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	138
structure length	138
Chain Sequence	GRATNGQFVTKTAKVLRYKFVRWDALLIIQFIDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHMIIQCNPVPGNIKMIKIKSVMLFTCLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 138 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

138 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:137});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Avirulent turkey hemorrhagic enteritis virus
publication title	Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3. pubmed doi rcsb
molecule keywords	FIBER
total genus	25
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2013-02-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.50	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	3zpeA00

3ZPFA 4D63A 4D62A 4CW8A 3ZPEA
chains in the Genus database with same CATH superfamily

1UXBA 1KACA 4D63A 1QHVA 4ODBA 2WBVA 2WBWA 2J1KC 4GU4A 4WYJA 2O39A 4K6TA 3EXVA 4XC5A 4XL8A 1KKEA 3N0IA 2BZUA 3F0YA 4GU3A 3ZPFA 1UXEA 2WSTA 3QNDA 4XQBA 4D62A 2BT7A 1P69A 4ATZA 3EXWA 3BQ4A 2J12A 1UXAA 2QLKA 3O8EA 3ZPEA 1H7ZA 1NOBA 3L88A 2WGTA 4K6WA 2JJLA 4LIYA 4CW8A 2VRSA 3EOYA 2IUMA 2BSFA 4XQAA 1QIUA 2BT8A 4K6UA 2IUNA 4K6VA 5MHSA 3L89A 2OJ6A 1KNBA 2J2JA 1P6AA 2OJ5A 4ZDGA 2WGUA 3S6XA 2BZVA 2W9LC 2VTWA 3CNCA
chains in the Genus database with same CATH topology

2BT8A 2IUNA 2JJLA 3ZPFA 4D63A 4D62A 4CW8A 2VRSA 2BT7A 2IUMA 2BSFA 2VTWA 3ZPEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3ZPF A;  4D63 A;  4D62 A;  4CW8 A;  3ZPE A; 
#chains in the Genus database with same CATH topology
 1UXB A;  1KAC A;  4D63 A;  1QHV A;  4ODB A;  2WBV A;  2WBW A;  2J1K C;  4GU4 A;  4WYJ A;  2O39 A;  4K6T A;  3EXV A;  4XC5 A;  4XL8 A;  1KKE A;  3N0I A;  2BZU A;  3F0Y A;  4GU3 A;  3ZPF A;  1UXE A;  2WST A;  3QND A;  4XQB A;  4D62 A;  2BT7 A;  1P69 A;  4ATZ A;  3EXW A;  3BQ4 A;  2J12 A;  1UXA A;  2QLK A;  3O8E A;  3ZPE A;  1H7Z A;  1NOB A;  3L88 A;  2WGT A;  4K6W A;  2JJL A;  4LIY A;  4CW8 A;  2VRS A;  3EOY A;  2IUM A;  2BSF A;  4XQA A;  1QIU A;  2BT8 A;  4K6U A;  2IUN A;  4K6V A;  5MHS A;  3L89 A;  2OJ6 A;  1KNB A;  2J2J A;  1P6A A;  2OJ5 A;  4ZDG A;  2WGU A;  3S6X A;  2BZV A;  2W9L C;  2VTW A;  3CNC A; 
#chains in the Genus database with same CATH homology
 2BT8 A;  2IUN A;  2JJL A;  3ZPF A;  4D63 A;  4D62 A;  4CW8 A;  2VRS A;  2BT7 A;  2IUM A;  2BSF A;  2VTW A;  3ZPE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZPEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization