3T3J | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	123
structure length	123
Chain Sequence	HPGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVIKKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLAAELTKALKTKLDLSSLAYSGK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Homo sapiens
publication title	Structure-Function Analysis of Friedreich's Ataxia Mutants Reveals Determinants of Frataxin Binding and Activation of the Fe-S Assembly Complex. pubmed doi rcsb
molecule keywords	Frataxin, mitochondrial
total genus	36
structure length	123
sequence length	123
ec nomenclature	ec 1.16.3.1: Ferroxidase.
pdb deposition date	2011-07-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01491	Frataxin_Cyay	Frataxin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin; Chain A	Frataxin/CyaY	3t3jA00

3S5FA 4LP1A 3S5DA 1EW4A 4EC2A 2P1XA 3S5EA 4JPDA 3OEQA 2GA5A 1EKGA 4HS5A 1LY7A 3T3JA 3S4MA 3T3TA 3OERA 3T3KA 3T3XA 2FQLA 3T3LA 1SOYA 2EFFA 4LK8A
chains in the Genus database with same CATH superfamily

3S5FA 4LP1A 3S5DA 1EW4A 4EC2A 2P1XA 3S5EA 4JPDA 1D2MA 3IMOA 3SSEA 4C26A 4P78C 3IAS7 1EKGA 2GA5A 3OEQA 3SSDA 4HS5A 4HEA7 1LY7A 3GD0A 3SSCA 3T3JA 3S4MA 1WHZA 2FUG7 3OERA 1V5RA 3T3TA 3A5PA 3IAM7 3T3KA 3T3XA 2FQLA 3T3LA 3GD9A 3I9V7 1SOYA 2EFFA 4LK8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3S5F A;  4LP1 A;  3S5D A;  1EW4 A;  4EC2 A;  2P1X A;  3S5E A;  4JPD A;  3OEQ A;  2GA5 A;  1EKG A;  4HS5 A;  1LY7 A;  3T3J A;  3S4M A;  3T3T A;  3OER A;  3T3K A;  3T3X A;  2FQL A;  3T3L A;  1SOY A;  2EFF A;  4LK8 A; 
#chains in the Genus database with same CATH topology
 3S5F A;  4LP1 A;  3S5D A;  1EW4 A;  4EC2 A;  2P1X A;  3S5E A;  4JPD A;  1D2M A;  3IMO A;  3SSE A;  4C26 A;  4P78 C;  3IAS 7;  1EKG A;  2GA5 A;  3OEQ A;  3SSD A;  4HS5 A;  4HEA 7;  1LY7 A;  3GD0 A;  3SSC A;  3T3J A;  3S4M A;  1WHZ A;  2FUG 7;  3OER A;  1V5R A;  3T3T A;  3A5P A;  3IAM 7;  3T3K A;  3T3X A;  2FQL A;  3T3L A;  3GD9 A;  3I9V 7;  1SOY A;  2EFF A;  4LK8 A; 
#chains in the Genus database with same CATH homology
 3S5F A;  4LP1 A;  3S5D A;  1EW4 A;  4EC2 A;  2P1X A;  3S5E A;  4JPD A;  3OEQ A;  2GA5 A;  1EKG A;  4HS5 A;  1LY7 A;  3T3J A;  3S4M A;  3T3T A;  3OER A;  3T3K A;  3T3X A;  2FQL A;  3T3L A;  1SOY A;  2EFF A;  4LK8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3T3JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations